In-silico modelling of the mitogen-activated protein kinase (MAPK) pathway in colorectal cancer: mutations and targeted therapy

S Sommariva, S Berra, G Biddau, G Caviglia… - Frontiers in Systems …, 2023 - frontiersin.org
Introduction: Chemical reaction networks (CRNs) are powerful tools for describing the
complex nature of cancer's onset, progression, and therapy. The main reason for their …

In-silico modelling of the mitogen-activated kinase (MAPK) pathway in colorectal cancer: mutations and targeted therapy

S Sommariva, S Berra, G Biddau, G Caviglia… - bioRxiv, 2023 - biorxiv.org
Chemical reaction networks are powerful tools for computing the complex nature of cancer's
onset, progression, and therapy. The main reason for their effectiveness is in the fact that …

[PDF][PDF] A Computational Tool For Sensitivity Analysis in Chemical Reaction Networks Modeling Cancer Cell Signaling

G Biddau, G Caviglia, M Piana, S Sommariva… - mida.unige.it
A CRN can be modeled through a system of ODE:{x (t)= Sv (x (t), k 0) x (0)= x0 where▶ x
(t)=(x1 (t),..., xn (t)) T: chemical species concentrations▶ k 0=(k 0 1,..., k 0 r) T: reaction rate …

An efficient Newton-based approach for computing steady states of chemical reaction networks modelling cancer cells

S Berraa, S Sommarivaa, F Benvenutoa, G Cavigliaa… - PROCEEDINGS OF SIMAI … - unibas.it
From a mathematical viewpoint, CRNs can be modelled as systems of autonomous ordinary
differential equations, whose steady state solutions yield the cells proteins concentrations at …