Sensitivity analysis approaches applied to systems biology models
Z Zi - IET systems biology, 2011 - IET
With the rising application of systems biology, sensitivity analysis methods have been widely
applied to study the biological systems, including metabolic networks, signalling pathways …
applied to study the biological systems, including metabolic networks, signalling pathways …
[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …
cell factories that convert sugars into chemicals. These processes range from the production …
Asymptotical stability of probabilistic Boolean networks with state delays
This paper devotes to establishing a bridge between asymptotical stability of a probabilistic
Boolean network (PBN) and a solution to its induced equations, which are induced from the …
Boolean network (PBN) and a solution to its induced equations, which are induced from the …
Amortized Bayesian inference on generative dynamical network models of epilepsy using deep neural density estimators
Whole-brain modeling of epilepsy combines personalized anatomical data with dynamical
models of abnormal activities to generate spatio-temporal seizure patterns as observed in …
models of abnormal activities to generate spatio-temporal seizure patterns as observed in …
A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering
Mathematical modeling is a key process to describe the behavior of biological networks.
One of the most difficult challenges is to build models that allow quantitative predictions of …
One of the most difficult challenges is to build models that allow quantitative predictions of …
Development of RC model for thermal dynamic analysis of buildings through model structure simplification
Data-driven models based on thermal resistor-capacitor networks (RC models) are useful in
enhancing the energy performance of buildings. This paper presents a simple yet effective …
enhancing the energy performance of buildings. This paper presents a simple yet effective …
Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability
Increasingly complex applications involve large datasets in combination with nonlinear and
high-dimensional mathematical models. In this context, statistical inference is a challenging …
high-dimensional mathematical models. In this context, statistical inference is a challenging …
Quantifying post-transcriptional regulation in the development of Drosophila melanogaster
K Becker, A Bluhm, N Casas-Vila, N Dinges… - Nature …, 2018 - nature.com
Even though proteins are produced from mRNA, the correlation between mRNA levels and
protein abundances is moderate in most studies, occasionally attributed to complex post …
protein abundances is moderate in most studies, occasionally attributed to complex post …
How to deal with parameters for whole-cell modelling
Dynamical systems describing whole cells are on the verge of becoming a reality. But as
models of reality, they are only useful if we have realistic parameters for the molecular …
models of reality, they are only useful if we have realistic parameters for the molecular …
[HTML][HTML] Quantitative immunology for physicists
The adaptive immune system is a dynamical, self-organized multiscale system that protects
vertebrates from both pathogens and internal irregularities, such as tumors. For these …
vertebrates from both pathogens and internal irregularities, such as tumors. For these …