Sensitivity analysis approaches applied to systems biology models

Z Zi - IET systems biology, 2011 - IET
With the rising application of systems biology, sensitivity analysis methods have been widely
applied to study the biological systems, including metabolic networks, signalling pathways …

[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance

J Almquist, M Cvijovic, V Hatzimanikatis, J Nielsen… - Metabolic …, 2014 - Elsevier
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …

Asymptotical stability of probabilistic Boolean networks with state delays

S Zhu, J Lu, Y Liu - IEEE Transactions on Automatic Control, 2019 - ieeexplore.ieee.org
This paper devotes to establishing a bridge between asymptotical stability of a probabilistic
Boolean network (PBN) and a solution to its induced equations, which are induced from the …

Amortized Bayesian inference on generative dynamical network models of epilepsy using deep neural density estimators

M Hashemi, AN Vattikonda, J Jha, V Sip… - Neural Networks, 2023 - Elsevier
Whole-brain modeling of epilepsy combines personalized anatomical data with dynamical
models of abnormal activities to generate spatio-temporal seizure patterns as observed in …

A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering

OD Kim, M Rocha, P Maia - Frontiers in microbiology, 2018 - frontiersin.org
Mathematical modeling is a key process to describe the behavior of biological networks.
One of the most difficult challenges is to build models that allow quantitative predictions of …

Development of RC model for thermal dynamic analysis of buildings through model structure simplification

Z Wang, Y Chen, Y Li - Energy and Buildings, 2019 - Elsevier
Data-driven models based on thermal resistor-capacitor networks (RC models) are useful in
enhancing the energy performance of buildings. This paper presents a simple yet effective …

Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability

A Raue, C Kreutz, FJ Theis… - … Transactions of the …, 2013 - royalsocietypublishing.org
Increasingly complex applications involve large datasets in combination with nonlinear and
high-dimensional mathematical models. In this context, statistical inference is a challenging …

Quantifying post-transcriptional regulation in the development of Drosophila melanogaster

K Becker, A Bluhm, N Casas-Vila, N Dinges… - Nature …, 2018 - nature.com
Even though proteins are produced from mRNA, the correlation between mRNA levels and
protein abundances is moderate in most studies, occasionally attributed to complex post …

How to deal with parameters for whole-cell modelling

AC Babtie, MPH Stumpf - Journal of The Royal Society …, 2017 - royalsocietypublishing.org
Dynamical systems describing whole cells are on the verge of becoming a reality. But as
models of reality, they are only useful if we have realistic parameters for the molecular …

[HTML][HTML] Quantitative immunology for physicists

G Altan-Bonnet, T Mora, AM Walczak - Physics Reports, 2020 - Elsevier
The adaptive immune system is a dynamical, self-organized multiscale system that protects
vertebrates from both pathogens and internal irregularities, such as tumors. For these …