[HTML][HTML] Emerging functional principles of tRNA-derived small RNAs and other regulatory small RNAs

Q Chen, T Zhou - Journal of Biological Chemistry, 2023 - Elsevier
Recent advancements in small RNA sequencing have unveiled a previously hidden world of
regulatory small noncoding RNAs (sncRNAs) that extend beyond the well-studied small …

A revised central dogma for the 21st century: All biology is cognitive information processing

WB Miller Jr, F Baluška, AS Reber - Progress in Biophysics and Molecular …, 2023 - Elsevier
Abstract Crick's Central Dogma has been a foundational aspect of 20th century biology,
describing an implicit relationship governing the flow of information in biological systems in …

Sequencing accuracy and systematic errors of nanopore direct RNA sequencing

W Liu-Wei, W van der Toorn, P Bohn, M Hölzer… - BMC genomics, 2024 - Springer
Abstract Background Direct RNA sequencing (dRNA-seq) on the Oxford Nanopore
Technologies (ONT) platforms can produce reads covering up to full-length gene transcripts …

Spatially revealed roles for lncRNAs in Drosophila spermatogenesis, Y chromosome function and evolution

Z Shao, J Hu, A Jandura, R Wilk… - Nature …, 2024 - nature.com
Unlike coding genes, the number of lncRNA genes in organism genomes is relatively
proportional to organism complexity. From plants to humans, the tissues with highest …

Are non‐protein coding RNAs junk or treasure? An attempt to explain and reconcile opposing viewpoints of whether the human genome is mostly transcribed into non …

NG Walter - BioEssays, 2024 - Wiley Online Library
The human genome project's lasting legacies are the emerging insights into human
physiology and disease, and the ascendance of biology as the dominant science of the 21st …

[HTML][HTML] Out of the dark: the emerging roles of lncRNAs in pain

AM Habib, JJ Cox, AL Okorokov - Trends in Genetics, 2024 - cell.com
The dark genome, the nonprotein-coding part of the genome, is replete with long noncoding
RNAs (lncRNAs). These functionally versatile transcripts, with specific temporal and spatial …

Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders

RE Andersen, IF Alkuraya, A Ajeesh, T Sakamoto… - Human Genetics, 2024 - Springer
In recent years, there has been increased focus on exploring the role the non-protein-coding
genome plays in Mendelian disorders. One class of particular interest is long non-coding …

Epigenetics and transgenerational inheritance

K Moelling - The Journal of Physiology, 2024 - Wiley Online Library
Epigenetic modifications can alter the function of genes. The epigenetics changes are
caused by environmental effects, which lead to chemical modifications of the DNA or the …

On the evolution of epigenetics via exaptation: A developmental systems perspective

DS Moore - Annals of the New York Academy of Sciences, 2023 - Wiley Online Library
Evolution and development are interrelated processes influenced by genomic, epigenetic,
and environmental factors. Epigenetic processes serve critical roles in development and …

A Kuhnian revolution in molecular biology: Most genes in complex organisms express regulatory RNAs

JS Mattick - BioEssays, 2023 - Wiley Online Library
Thomas Kuhn described the progress of science as comprising occasional paradigm shifts
separated by interludes of 'normal science'. The paradigm that has held sway since the …