GenStore: A high-performance in-storage processing system for genome sequence analysis
Read map** is a fundamental step in many genomics applications. It is used to identify
potential matches and differences between fragments (called reads) of a sequenced …
potential matches and differences between fragments (called reads) of a sequenced …
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis
Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read map**
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
that can sequence long fragments of a genome into raw electrical signals at low cost …
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
Metagenomics, the study of the genome sequences of diverse organisms in a common
environment, has led to significant advances in many fields. Since the species present in a …
environment, has led to significant advances in many fields. Since the species present in a …
SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences
MD Rumpf, M Alser, AE Gollwitzer, J Lindegger… - ar** of Deoxyribonucleic Acid (DNA) reads produced by the new
massively parallel sequencing machines is a fundamental initial step in the DNA analysis …
massively parallel sequencing machines is a fundamental initial step in the DNA analysis …
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes
Nanopore sequencers generate electrical raw signals in real-time while sequencing long
genomic strands. These raw signals can be analyzed as they are generated, providing an …
genomic strands. These raw signals can be analyzed as they are generated, providing an …
G-Learned Index: Enabling Efficient Learned Index on GPU
AI and GPU technologies have been widely applied to solve Big Data problems. The total
data volume worldwide reaches 200 zettabytes in 2022. How to efficiently index the required …
data volume worldwide reaches 200 zettabytes in 2022. How to efficiently index the required …
Space-efficient computation of parallel approximate string matching
Approximate string matching (ASM) has a number of applications in many disciplines,
ranging from information retrieval to gene matching. Conventional solution to this problem is …
ranging from information retrieval to gene matching. Conventional solution to this problem is …
GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis
Genome sequence analysis, which analyzes the DNA sequences of organisms, is important
for many applications in personalized medicine 1–8, outbreak tracing 9–14, and …
for many applications in personalized medicine 1–8, outbreak tracing 9–14, and …