Immuno-modulatory effects of intervertebral disc cells

P Bermudez-Lekerika, KB Crump… - Frontiers in cell and …, 2022 - frontiersin.org
Low back pain is a highly prevalent, chronic, and costly medical condition predominantly
triggered by intervertebral disc degeneration (IDD). IDD is often caused by structural and …

A survey on graph processing accelerators: Challenges and opportunities

CY Gui, L Zheng, B He, C Liu, XY Chen… - Journal of Computer …, 2019 - Springer
Graph is a well known data structure to represent the associated relationships in a variety of
applications, eg, data science and machine learning. Despite a wealth of existing efforts on …

A combinatorial approach to graphlet counting

T Hočevar, J Demšar - Bioinformatics, 2014 - academic.oup.com
Motivation: Small-induced subgraphs called graphlets are emerging as a possible tool for
exploration of global and local structure of networks and for analysis of roles of individual …

Topological network alignment uncovers biological function and phylogeny

O Kuchaiev, T Milenković… - Journal of the …, 2010 - royalsocietypublishing.org
Sequence comparison and alignment has had an enormous impact on our understanding of
evolution, biology and disease. Comparison and alignment of biological networks will …

Optimal network alignment with graphlet degree vectors

T Milenković, WL Ng, W Hayes, N Pržulj - Cancer informatics, 2010 - journals.sagepub.com
Important biological information is encoded in the topology of biological networks.
Comparative analyses of biological networks are proving to be valuable, as they can lead to …

Exploring the structure and function of temporal networks with dynamic graphlets

Y Hulovatyy, H Chen, T Milenković - Bioinformatics, 2015 - academic.oup.com
Motivation: With increasing availability of temporal real-world networks, how to efficiently
study these data? One can model a temporal network as a single aggregate static network …

Simultaneous optimization of both node and edge conservation in network alignment via WAVE

Y Sun, J Crawford, J Tang, T Milenković - Algorithms in Bioinformatics …, 2015 - Springer
Network alignment can be used to transfer functional knowledge between conserved
regions of different networks. Existing methods use a node cost function (NCF) to compare …

Dynamic networks reveal key players in aging

FE Faisal, T Milenković - Bioinformatics, 2014 - academic.oup.com
Motivation: Because susceptibility to diseases increases with age, studying aging gains
importance. Analyses of gene expression or sequence data, which have been …

The post-genomic era of biological network alignment

FE Faisal, L Meng, J Crawford, T Milenković - EURASIP Journal on …, 2015 - Springer
Biological network alignment aims to find regions of topological and functional (dis)
similarities between molecular networks of different species. Then, network alignment can …

Computation of graphlet orbits for nodes and edges in sparse graphs

T Hočevar, J Demšar - Journal of Statistical Software, 2016 - jstatsoft.org
Graphlet analysis is a useful tool for describing local network topology around individual
nodes or edges. A node or an edge can be described by a vector containing the counts of …