Immuno-modulatory effects of intervertebral disc cells
P Bermudez-Lekerika, KB Crump… - Frontiers in cell and …, 2022 - frontiersin.org
Low back pain is a highly prevalent, chronic, and costly medical condition predominantly
triggered by intervertebral disc degeneration (IDD). IDD is often caused by structural and …
triggered by intervertebral disc degeneration (IDD). IDD is often caused by structural and …
A survey on graph processing accelerators: Challenges and opportunities
Graph is a well known data structure to represent the associated relationships in a variety of
applications, eg, data science and machine learning. Despite a wealth of existing efforts on …
applications, eg, data science and machine learning. Despite a wealth of existing efforts on …
A combinatorial approach to graphlet counting
T Hočevar, J Demšar - Bioinformatics, 2014 - academic.oup.com
Motivation: Small-induced subgraphs called graphlets are emerging as a possible tool for
exploration of global and local structure of networks and for analysis of roles of individual …
exploration of global and local structure of networks and for analysis of roles of individual …
Topological network alignment uncovers biological function and phylogeny
Sequence comparison and alignment has had an enormous impact on our understanding of
evolution, biology and disease. Comparison and alignment of biological networks will …
evolution, biology and disease. Comparison and alignment of biological networks will …
Optimal network alignment with graphlet degree vectors
Important biological information is encoded in the topology of biological networks.
Comparative analyses of biological networks are proving to be valuable, as they can lead to …
Comparative analyses of biological networks are proving to be valuable, as they can lead to …
Exploring the structure and function of temporal networks with dynamic graphlets
Motivation: With increasing availability of temporal real-world networks, how to efficiently
study these data? One can model a temporal network as a single aggregate static network …
study these data? One can model a temporal network as a single aggregate static network …
Simultaneous optimization of both node and edge conservation in network alignment via WAVE
Network alignment can be used to transfer functional knowledge between conserved
regions of different networks. Existing methods use a node cost function (NCF) to compare …
regions of different networks. Existing methods use a node cost function (NCF) to compare …
Dynamic networks reveal key players in aging
Motivation: Because susceptibility to diseases increases with age, studying aging gains
importance. Analyses of gene expression or sequence data, which have been …
importance. Analyses of gene expression or sequence data, which have been …
The post-genomic era of biological network alignment
Biological network alignment aims to find regions of topological and functional (dis)
similarities between molecular networks of different species. Then, network alignment can …
similarities between molecular networks of different species. Then, network alignment can …
Computation of graphlet orbits for nodes and edges in sparse graphs
T Hočevar, J Demšar - Journal of Statistical Software, 2016 - jstatsoft.org
Graphlet analysis is a useful tool for describing local network topology around individual
nodes or edges. A node or an edge can be described by a vector containing the counts of …
nodes or edges. A node or an edge can be described by a vector containing the counts of …