Bark beetle population dynamics in the Anthropocene: challenges and solutions

PHW Biedermann, J Müller, JC Grégoire… - Trends in ecology & …, 2019 - cell.com
Tree-killing bark beetles are the most economically important insects in conifer forests
worldwide. However, despite> 200 years of research, the drivers of population eruptions and …

Sequence Alignment/Map format: a comprehensive review of approaches and applications

Y Liu, X Shen, Y Gong, Y Liu, B Song… - Briefings in …, 2023 - academic.oup.com
Abstract The Sequence Alignment/Map (SAM) format file is the text file used to record
alignment information. Alignment is the core of sequencing analysis, and downstream tasks …

Genomic evidence for two phylogenetic species and long-term population bottlenecks in red pandas

Y Hu, A Thapa, H Fan, T Ma, Q Wu, S Ma, D Zhang… - Science …, 2020 - science.org
The red panda (Ailurus fulgens), an endangered Himalaya-endemic mammal, has been
classified as two subspecies or even two species–the Himalayan red panda (A. fulgens) and …

Evolutionary conservation genomics reveals recent speciation and local adaptation in threatened takins

L Yang, F Wei, X Zhan, H Fan, P Zhao… - Molecular Biology …, 2022 - academic.oup.com
Incorrect species delimitation will lead to inappropriate conservation decisions, especially
for threatened species. The takin (Budorcas taxicolor) is a large artiodactyl endemic to the …

Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales

S Lopez‐Nieves, Y Yang, A Timoneda… - New …, 2018 - Wiley Online Library
Diverse natural products are synthesized in plants by specialized metabolic enzymes, which
are often lineage‐specific and derived from gene duplication followed by functional …

Wolbachia Acquisition by Drosophila yakuba-Clade Hosts and Transfer of Incompatibility Loci Between Distantly Related Wolbachia

BS Cooper, D Vanderpool, WR Conner, DR Matute… - Genetics, 2019 - academic.oup.com
Maternally transmitted Wolbachia infect about half of insect species, yet the predominant
mode (s) of Wolbachia acquisition remains uncertain. Species-specific associations could …

Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome‐scale data set

GW Stull, R Duno de Stefano… - American Journal of …, 2015 - Wiley Online Library
PREMISE OF THE STUDY: Major relationships within Lamiidae, an asterid clade with∼
40000 species, have largely eluded resolution despite two decades of intensive study. The …

[HTML][HTML] Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle

B Wielstra, E McCartney-Melstad, JW Arntzen… - Molecular Phylogenetics …, 2019 - Elsevier
Newts of the genus Triturus (marbled and crested newts) exhibit substantial variation in the
number of trunk vertebrae (NTV) and a higher NTV corresponds to a longer annual aquatic …

Genomic data recover previously undetectable fragmentation effects in an endangered amphibian

E McCartney‐Melstad, JK Vu, HB Shaffer - Molecular Ecology, 2018 - Wiley Online Library
A critical consideration when using molecular ecological methods to detect trends and
parameterize models at very fine spatial and temporal scales has always been the technical …

Exon capture optimization in amphibians with large genomes

E McCartney‐Melstad, GG Mount… - Molecular ecology …, 2016 - Wiley Online Library
Gathering genomic‐scale data efficiently is challenging for nonmodel species with large,
complex genomes. Transcriptome sequencing is accessible for organisms with large …