Delivery of ubiquitinated substrates to protein-unfolding machines

S Elsasser, D Finley - Nature cell biology, 2005 - nature.com
Recent work has shown that ubiquitination leads to recognition of target proteins by diverse
ubiquitin receptors. One family of receptors delivers the ubiquitinated proteins to the …

Meddling with fate: the proteasomal deubiquitinating enzymes

SAH de Poot, G Tian, D Finley - Journal of molecular biology, 2017 - Elsevier
Abstract Three deubiquitinating enzymes—Rpn11, Usp14, and Uch37—are associated with
the proteasome regulatory particle. These enzymes allow proteasomes to remove ubiquitin …

Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding

YC Kim, G Hummer - Journal of molecular biology, 2008 - Elsevier
We develop coarse-grained models and effective energy functions for simulating
thermodynamic and structural properties of multiprotein complexes with relatively low …

[HTML][HTML] The complexity of recognition of ubiquitinated substrates by the 26S proteasome

A Ciechanover, A Stanhill - Biochimica et Biophysica Acta (BBA)-Molecular …, 2014 - Elsevier
Abstract The Ubiquitin Proteasome System (UPS) was discovered in two steps. Initially, APF-
1 (ATP-dependent proteolytic Factor 1) later identified as ubiquitin (Ub), a hitherto known …

SCA3: neurological features, pathogenesis and animal models

O Riess, U Rüb, A Pastore, P Bauer, L Schöls - The Cerebellum, 2008 - Springer
The most frequent subtype of autosomal dominant inherited spinocerebellar ataxias is
caused by CAG repeat expansions of more than 55 units in the ataxin-3 gene. The clinical …

Ubiquitin interactions of NZF zinc fingers

SL Alam, J Sun, M Payne, BD Welch, BK Blake… - The EMBO …, 2004 - embopress.org
Ubiquitin (Ub) functions in many different biological pathways, where it typically interacts
with proteins that contain modular Ub recognition domains. One such recognition domain is …

Gene expression analysis of bipolar disorder reveals downregulation of the ubiquitin cycle and alterations in synaptic genes

MM Ryan, HE Lockstone, SJ Huffaker… - Molecular …, 2006 - nature.com
Bipolar affective disorder is a severe psychiatric disorder with a strong genetic component
but unknown pathophysiology. We used microarray technology to determine the expression …

Proteasome interaction with ubiquitinated substrates: from mechanisms to therapies

X Chen, ZM Htet, E López‐Alfonzo, A Martin… - The FEBS …, 2021 - Wiley Online Library
The 26S proteasome is responsible for regulated proteolysis in eukaryotic cells. Its
substrates are diverse in structure, function, sequence length, and amino acid composition …

Isolation of mammalian 26S proteasomes and p97/VCP complexes using the ubiquitin-like domain from HHR23B reveals novel proteasome-associated proteins

HC Besche, W Haas, SP Gygi, AL Goldberg - Biochemistry, 2009 - ACS Publications
Recent studies, mainly in yeast, have identified various cofactors that associate with the 26S
proteasome and appear to influence its function. To identify these proteins in different cells …

The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition

G Nicastro, RP Menon, L Masino… - Proceedings of the …, 2005 - National Acad Sciences
The Josephin domain plays an important role in the cellular functions of ataxin-3, the protein
responsible for the neurodegenerative Machado–Joseph disease. We have determined the …