cp2k: atomistic simulations of condensed matter systems

J Hutter, M Iannuzzi, F Schiffmann… - Wiley Interdisciplinary …, 2014 - Wiley Online Library
cp2k has become a versatile open‐source tool for the simulation of complex systems on the
nanometer scale. It allows for sampling and exploring potential energy surfaces that can be …

Mixed quantum mechanical/molecular mechanical molecular dynamics simulations of biological systems in ground and electronically excited states

E Brunk, U Rothlisberger - Chemical reviews, 2015 - ACS Publications
The quantum nature of electrons and nuclei is manifested in countless biological events
including the rearrangements of electrons in biochemical reactions, electron and proton …

[HTML][HTML] Octopus, a computational framework for exploring light-driven phenomena and quantum dynamics in extended and finite systems

N Tancogne-Dejean, MJT Oliveira… - The Journal of …, 2020 - pubs.aip.org
Over the last few years, extraordinary advances in experimental and theoretical tools have
allowed us to monitor and control matter at short time and atomic scales with a high degree …

Laser picoscopy of valence electrons in solids

H Lakhotia, HY Kim, M Zhan, S Hu, S Meng… - Nature, 2020 - nature.com
Valence electrons contribute a small fraction of the total electron density of materials, but
they determine their essential chemical, electronic and optical properties. Strong laser fields …

Real-space grids and the Octopus code as tools for the development of new simulation approaches for electronic systems

X Andrade, D Strubbe, U De Giovannini… - Physical Chemistry …, 2015 - pubs.rsc.org
Real-space grids are a powerful alternative for the simulation of electronic systems. One of
the main advantages of the approach is the flexibility and simplicity of working directly in real …

Time-dependent density-functional theory: concepts and applications

CA Ullrich - 2011 - books.google.com
Time-dependent density-functional theory (TDDFT) describes the quantum dynamics of
interacting electronic many-body systems formally exactly and in a practical and efficient …

NWChem: Past, present, and future

E Apra, EJ Bylaska, WA De Jong, N Govind… - The Journal of …, 2020 - pubs.aip.org
Specialized computational chemistry packages have permanently reshaped the landscape
of chemical and materials science by providing tools to support and guide experimental …

Real-time time-dependent electronic structure theory

X Li, N Govind, C Isborn, AE DePrince III… - Chemical …, 2020 - ACS Publications
Real-time electronic structure methods provide an unprecedented view of electron dynamics
and ultrafast spectroscopy on the atto-and femtosecond time scale with vast potential to yield …

octopus: a tool for the application of time‐dependent density functional theory

A Castro, H Appel, M Oliveira, CA Rozzi… - … status solidi (b), 2006 - Wiley Online Library
We report on the background, current status, and current lines of development of the octopus
project. This program materializes the main equations of density‐functional theory in the …

Spectroscopy in complex environments from QM–MM simulations

UN Morzan, DJ Alonso de Armino, NO Foglia… - Chemical …, 2018 - ACS Publications
The applications of multiscale quantum–classical (QM–MM) approaches have shown an
extraordinary expansion and diversification in the last couple of decades. A great proportion …