Tissue-specific macrophages: how they develop and choreograph tissue biology
Macrophages are innate immune cells that form a 3D network in all our tissues, where they
phagocytose dying cells and cell debris, immune complexes, bacteria and other waste …
phagocytose dying cells and cell debris, immune complexes, bacteria and other waste …
CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics
Recent advances in single-cell sequencing technologies offer an opportunity to explore cell–
cell communication in tissues systematically and with reduced bias. A key challenge is …
cell communication in tissues systematically and with reduced bias. A key challenge is …
Cell2location maps fine-grained cell types in spatial transcriptomics
Spatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in
health and disease, but comprehensive map** of cell types in situ remains a challenge …
health and disease, but comprehensive map** of cell types in situ remains a challenge …
[HTML][HTML] Spatial multiomics map of trophoblast development in early pregnancy
The relationship between the human placenta—the extraembryonic organ made by the
fetus, and the decidua—the mucosal layer of the uterus, is essential to nurture and protect …
fetus, and the decidua—the mucosal layer of the uterus, is essential to nurture and protect …
Hypoxic niches attract and sequester tumor-associated macrophages and cytotoxic T cells and reprogram them for immunosuppression
Glioblastoma (GBM), a highly lethal brain cancer, is notorious for immunosuppression, but
the mechanisms remain unclear. Here, we documented a temporospatial patterning of tumor …
the mechanisms remain unclear. Here, we documented a temporospatial patterning of tumor …
Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
Systematic comparison of sequencing-based spatial transcriptomic methods
Y You, Y Fu, L Li, Z Zhang, S Jia, S Lu, W Ren, Y Liu… - Nature …, 2024 - nature.com
Recent developments of sequencing-based spatial transcriptomics (sST) have catalyzed
important advancements by facilitating transcriptome-scale spatial gene expression …
important advancements by facilitating transcriptome-scale spatial gene expression …
Yolk sac cell atlas reveals multiorgan functions during human early development
The extraembryonic yolk sac (YS) ensures delivery of nutritional support and oxygen to the
develo** embryo but remains ill-defined in humans. We therefore assembled a …
develo** embryo but remains ill-defined in humans. We therefore assembled a …
An integrated single-cell reference atlas of the human endometrium
The complex and dynamic cellular composition of the human endometrium remains poorly
understood. Previous endometrial single-cell atlases profiled few donors and lacked …
understood. Previous endometrial single-cell atlases profiled few donors and lacked …
GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model
Deciphering universal gene regulatory mechanisms in diverse organisms holds great
potential for advancing our knowledge of fundamental life processes and facilitating clinical …
potential for advancing our knowledge of fundamental life processes and facilitating clinical …