From fungal secretomes to enzymes cocktails: The path forward to bioeconomy

C Filiatrault-Chastel, S Heiss-Blanquet, A Margeot… - Biotechnology …, 2021 - Elsevier
Bioeconomy is seen as a way to mitigate the carbon footprint of human activities by reducing
at least part of the fossil resources-based economy. In this new paradigm of sustainable …

Proteomics as a tool for studying bacterial virulence and antimicrobial resistance

FJ Pérez-Llarena, G Bou - Frontiers in microbiology, 2016 - frontiersin.org
Proteomic studies have improved our understanding of the microbial world. The most recent
advances in this field have helped us to explore aspects beyond genomics. For example, by …

[HTML][HTML] Exploring the antibacterial mechanism of essential oils by membrane permeability, apoptosis and biofilm formation combination with proteomics analysis …

C Tang, J Chen, L Zhang, R Zhang, S Zhang… - International Journal of …, 2020 - Elsevier
Methicillin-resistant Staphylococcus aureus (MRSA) is one of the important causes of food
poisoning and infectious diseases worldwide, it can produce a large number of virulence …

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota

W **ong, PE Abraham, Z Li, C Pan, RL Hettich - Proteomics, 2015 - Wiley Online Library
The human gastrointestinal tract is a complex, dynamic ecosystem that consists of a carefully
tuned balance of human host and microbiota membership. The microbiome is not merely a …

Impact of the omic technologies for understanding the modes of action of biological control agents against plant pathogens

S Massart, M Perazzolli, M Höfte, I Pertot, MH Jijakli - BioControl, 2015 - Springer
The characterization of microbial biological control agents (MBCAs) is crucial to improve
their efficacy and consistency as biopesticides. Powerful approaches to characterize …

Comparative metabolomics revealing Staphylococcus aureus metabolic response to different antibiotics

K Schelli, F Zhong, J Zhu - Microbial biotechnology, 2017 - Wiley Online Library
It is known that changes in bacterial metabolism can contribute to the modulation of bacterial
susceptibility to antibiotics. Understanding how bacterial metabolism is impacted by …

Comparative evaluation of label‐free quantification methods for shotgun proteomics

JA Bubis, LI Levitsky, MV Ivanov… - Rapid …, 2017 - Wiley Online Library
Rationale Label‐free quantification (LFQ) is a popular strategy for shotgun proteomics. A
variety of LFQ algorithms have been developed recently. However, a comprehensive …

Soil and leaf litter metaproteomics—a brief guideline from sampling to understanding

KM Keiblinger, S Fuchs… - FEMS microbiology …, 2016 - academic.oup.com
The increasing application of soil metaproteomics is providing unprecedented, in-depth
characterization of the composition and functionality of in situ microbial communities …

Microbial derived compounds, a step toward enhancing microbial inoculants technology for sustainable agriculture

J Naamala, DL Smith - Frontiers in Microbiology, 2021 - frontiersin.org
Sustainable agriculture remains a focus for many researchers, in an effort to minimize
environmental degradation and climate change. The use of plant growth promoting …

Nitrosomonas europaea adaptation to anoxic-oxic cycling: insights from transcription analysis, proteomics and metabolic network modeling

R Yu, O Perez-Garcia, H Lu, K Chandran - Science of The Total …, 2018 - Elsevier
In suboxic or anoxic environments, nitrous oxide (N 2 O) can be produced by ammonia
oxidizing bacteria (AOB) as a potent greenhouse gas. Although N 2 O producing inventory …