Soil aggregate microbial communities: towards understanding microbiome interactions at biologically relevant scales

RL Wilpiszeski, JA Aufrecht, ST Retterer… - Applied and …, 2019 - Am Soc Microbiol
Soils contain a tangle of minerals, water, nutrients, gases, plant roots, decaying organic
matter, and microorganisms which work together to cycle nutrients and support terrestrial …

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

H Bin Jang, B Bolduc, O Zablocki, JH Kuhn… - Nature …, 2019 - nature.com
Microbiomes from every environment contain a myriad of uncultivated archaeal and
bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable …

Soil viruses are underexplored players in ecosystem carbon processing

G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko… - …, 2018 - Am Soc Microbiol
Rapidly thawing permafrost harbors∼ 30 to 50% of global soil carbon, and the fate of this
carbon remains unknown. Microorganisms will play a central role in its fate, and their viruses …

Cooling perspectives on the risk of pathogenic viruses from thawing permafrost

R Mackelprang, RA Barbato, AM Ramey… - …, 2025 - journals.asm.org
Climate change is inducing wide-scale permafrost thaw in the Arctic and subarctic, triggering
concerns that long-dormant pathogens could reemerge from the thawing ground and initiate …

Tundra soil viruses mediate responses of microbial communities to climate warming

M Ji, X Fan, CR Cornell, Y Zhang, MM Yuan, Z Tian… - MBio, 2023 - Am Soc Microbiol
The rise of global temperature causes the degradation of the substantial reserves of carbon
(C) stored in tundra soils, in which microbial processes play critical roles. Viruses are known …

[HTML][HTML] Thousands of small, novel genes predicted in global phage genomes

BJ Fremin, AS Bhatt, NC Kyrpides, A Sengupta… - Cell reports, 2022 - cell.com
Summary Small genes (< 150 nucleotides) have been systematically overlooked in phage
genomes. We employ a large-scale comparative genomics approach to predict> 40,000 …

DNA viral diversity, abundance, and functional potential vary across grassland soils with a range of historical moisture regimes

R Wu, MR Davison, WC Nelson, EB Graham… - MBio, 2021 - Am Soc Microbiol
Soil viruses are abundant, but the influence of the environment and climate on soil viruses
remains poorly understood. Here, we addressed this gap by comparing the diversity …

Effects of experimentally elevated virus abundance on soil carbon cycling across varying ecosystem types

ED Osburn, SG Baer, SE Evans, SG McBride… - Soil Biology and …, 2024 - Elsevier
Viruses are abundant and diverse members of soil communities, but their influences on soil
biogeochemical cycling are poorly understood. To assess the potential for viruses to …

Stable-isotope-informed, genome-resolved metagenomics uncovers potential cross-kingdom interactions in rhizosphere soil

EP Starr, S Shi, SJ Blazewicz, BJ Koch, AJ Probst… - Msphere, 2021 - Am Soc Microbiol
The functioning, health, and productivity of soil are intimately tied to a complex network of
interactions, particularly in plant root-associated rhizosphere soil. We conducted a stable …

Novel viral communities potentially assisting in carbon, nitrogen, and sulfur metabolism in the upper slope sediments of Mariana Trench

J Zhao, H **g, Z Wang, L Wang, H Jian, R Zhang… - …, 2022 - Am Soc Microbiol
Viruses are ubiquitous in the oceans. Even in the deep sediments of the Mariana Trench,
viruses have high productivity. However, little is known about their species composition and …