[HTML][HTML] Marine microbial-derived resource exploration: Uncovering the hidden potential of marine carotenoids

R Steven, Z Humaira, Y Natanael, FM Dwivany… - Marine Drugs, 2022 - mdpi.com
Microbes in marine ecosystems are known to produce secondary metabolites. One of which
are carotenoids, which have numerous industrial applications, hence their demand will …

Machine learning based implicit solvent model for aqueous-solution alanine dipeptide molecular dynamics simulations

S Yao, R Van, X Pan, JH Park, Y Mao, J Pu, Y Mei… - RSC …, 2023 - pubs.rsc.org
Inspired by the recent work from Noé and coworkers on the development of machine
learning based implicit solvent model for the simulation of solvated peptides [Chen et al., J …

Ensembles are required to handle aleatoric and parametric uncertainty in molecular dynamics simulation

M Vassaux, S Wan, W Edeling… - Journal of chemical …, 2021 - ACS Publications
Classical molecular dynamics is a computer simulation technique that is in widespread use
across many areas of science, from physics and chemistry to materials, biology, and …

In silico assessments of the small molecular boron agents to pave the way for artificial intelligence-based boron neutron capture therapy

Y Zhang, J Cai, NS Hosmane, Y Zhu - European Journal of Medicinal …, 2024 - Elsevier
Boron neutron capture therapy (BNCT) is a highly targeted, selective and effective technique
to cure various types of cancers, with less harm to the healthy cells. In principle, BNCT …

Recent advances in solvation modeling applications: Chemical properties, reaction mechanisms and catalysis

L Xu, ML Coote - Annual Reports in Computational Chemistry, 2022 - Elsevier
In this work, we review recent studies in the field of computational solvation. Methods at
different scales from ab initio to force field calculations with both implicit solvent and explicit …

Uncertainty quantification in materials modeling

Y Wang, DL McDowell - Uncertainty Quantification in Multiscale Materials …, 2020 - Elsevier
Abstract Integrated Computational Materials Engineering (ICME) has been widely
articulated and pursued over the past decade. Recognition of the need to ensure reliability …

Molecular dynamics simulation studies on uptake of fipronil sulfone by gut microbiome and its influence on risk for cause of Parkinson's disease

A Bhat, V Chandramohan, S Sabat - Molecular Simulation, 2024 - Taylor & Francis
Biotransformation of Fipronil forms three metabolites: fipronil sulfone, fipronil sulfide and
fipronil desulfinyl. Among the triad of metabolites, fipronil sulfone exhibits quantitatively …

Sliced-inverse-regression--aided rotated compressive sensing method for uncertainty quantification

X Yang, W Li, A Tartakovsky - SIAM/ASA Journal on Uncertainty Quantification, 2018 - SIAM
Compressive-sensing--based uncertainty quantification methods have become a powerful
tool for problems with limited data. In this work, we use the sliced inverse regression (SIR) …

A general framework for enhancing sparsity of generalized polynomial chaos expansions

X Yang, X Wan, L Lin, H Lei - International Journal for …, 2019 - dl.begellhouse.com
Compressive sensing has become a powerful addition to uncertainty quantification when
only limited data are available. In this paper, we provide a general framework to enhance …

Diagnostics of data-driven models: uncertainty quantification of PM7 semi-empirical quantum chemical method

J Oreluk, Z Liu, A Hegde, W Li, A Packard… - Scientific Reports, 2018 - nature.com
We report an evaluation of a semi-empirical quantum chemical method PM7 from the
perspective of uncertainty quantification. Specifically, we apply Bound-to-Bound Data …