Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

FJ O'Reilly, J Rappsilber - Nature structural & molecular biology, 2018 - nature.com
Over the past decade, cross-linking mass spectrometry (CLMS) has developed into a robust
and flexible tool that provides medium-resolution structural information. CLMS data provide …

[HTML][HTML] Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

A Leitner, T Walzthoeni, A Kahraman, F Herzog… - Molecular & Cellular …, 2010 - Elsevier
Chemical cross-linking of reactive groups in native proteins and protein complexes in
combination with the identification of cross-linked sites by mass spectrometry has been in …

Kojak: efficient analysis of chemically cross-linked protein complexes

MR Hoopmann, A Zelter, RS Johnson… - Journal of proteome …, 2015 - ACS Publications
Protein chemical cross-linking and mass spectrometry enable the analysis of protein–protein
interactions and protein topologies; however, complicated cross-linked peptide spectra …

Chemical cross‐linking and native mass spectrometry: A fruitful combination for structural biology

A Sinz, C Arlt, D Chorev, M Sharon - Protein Science, 2015 - Wiley Online Library
Mass spectrometry (MS) is becoming increasingly popular in the field of structural biology for
analyzing protein three‐dimensional‐structures and for map** protein–protein …

Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching

A Maiolica, D Cittaro, D Borsotti, L Sennels… - Molecular & Cellular …, 2007 - mcponline.org
Most protein complexes are inaccessible to high resolution structural analysis. We report the
results of a combined approach of cross-linking, mass spectrometry, and bioinformatics to …

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein–protein interaction studies

X Tang, JE Bruce - Molecular biosystems, 2010 - pubs.rsc.org
Chemical cross-linking coupled with mass spectrometry, an emerging approach for protein
topology and interaction studies, has gained increasing interest in the past few years. A …

Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry

H Zhang, X Tang, GR Munske, N Tolic… - Molecular & Cellular …, 2009 - mcponline.org
We present results from a novel strategy that enables concurrent identification of protein-
protein interactions and topologies in living cells without specific antibodies or genetic …

In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075

X Wu, JD Chavez, DK Schweppe, C Zheng… - Nature …, 2016 - nature.com
The nosocomial pathogen Acinetobacter baumannii is a frequent cause of hospital-acquired
infections worldwide and is a challenge for treatment due to its evolved resistance to …

In Vivo Protein Interaction Network Identified with a Novel Real-Time Cross-Linked Peptide Identification Strategy

CR Weisbrod, JD Chavez, JK Eng, L Yang… - Journal of proteome …, 2013 - ACS Publications
Protein interaction topologies are critical determinants of biological function. Large-scale or
proteome-wide measurements of protein interaction topologies in cells currently pose an …

From classical to new generation approaches: An excursus of-omics methods for investigation of protein-protein interaction networks

I Iacobucci, V Monaco, F Cozzolino, M Monti - Journal of Proteomics, 2021 - Elsevier
Functional Proteomics aims to the identification of in vivo protein-protein interaction (PPI) in
order to piece together protein complexes, and therefore, cell pathways involved in …