Metabolic exchanges are ubiquitous in natural microbial communities

C Kost, KR Patil, J Friedman, SL Garcia… - Nature Microbiology, 2023 - nature.com
Microbial communities drive global biogeochemical cycles and shape the health of plants
and animals—including humans. Their structure and function are determined by ecological …

The ecological roles of bacterial chemotaxis

JM Keegstra, F Carrara, R Stocker - Nature Reviews Microbiology, 2022 - nature.com
How bacterial chemotaxis is performed is much better understood than why. Traditionally,
chemotaxis has been understood as a foraging strategy by which bacteria enhance their …

Soil microbiomes and climate change

JK Jansson, KS Hofmockel - Nature Reviews Microbiology, 2020 - nature.com
The soil microbiome governs biogeochemical cycling of macronutrients, micronutrients and
other elements vital for the growth of plants and animal life. Understanding and predicting …

Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution

D Dar, N Dar, L Cai, DK Newman - Science, 2021 - science.org
INTRODUCTION Microbial populations display heterogeneous gene expression profiles that
result in phenotypic differences between individual bacteria. This diversity can allow …

[HTML][HTML] From diversity to complexity: Microbial networks in soils

K Guseva, S Darcy, E Simon, LV Alteio… - Soil Biology and …, 2022 - Elsevier
Network analysis has been used for many years in ecological research to analyze
organismal associations, for example in food webs, plant-plant or plant-animal interactions …

[PDF][PDF] Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature

LS McKee, SL La Rosa, B Westereng… - Environmental …, 2021 - Wiley Online Library
The Bacteroidetes phylum is renowned for its ability to degrade a wide range of complex
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …

Trophic interactions and the drivers of microbial community assembly

M Gralka, R Szabo, R Stocker, OX Cordero - Current Biology, 2020 - cell.com
Despite numerous surveys of gene and species content in heterotrophic microbial
communities, such as those found in animal guts, oceans, or soils, it is still unclear whether …

Soil microbiomes under climate change and implications for carbon cycling

D Naylor, N Sadler, A Bhattacharjee… - Annual Review of …, 2020 - annualreviews.org
Communities of soil microorganisms (soil microbiomes) play a major role in biogeochemical
cycles and support of plant growth. Here we focus primarily on the roles that the soil …

Ecology and evolution of metabolic cross-feeding interactions in bacteria

G D'Souza, S Shitut, D Preussger, G Yousif… - Natural product …, 2018 - pubs.rsc.org
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …

The soil microbiome—from metagenomics to metaphenomics

JK Jansson, KS Hofmockel - Current opinion in microbiology, 2018 - Elsevier
Soil microorganisms carry out important processes, including support of plant growth and
cycling of carbon and other nutrients. However, the majority of soil microbes have not yet …