Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Deciphering combinatorial post-translational modifications by top-down mass spectrometry

JS Brodbelt - Current opinion in chemical biology, 2022 - Elsevier
Post-translational modifications (PTMs) create vast structural and functional diversity of
proteins, ultimately modulating protein function and degradation, influencing cellular …

Top-“Double-Down” Mass Spectrometry of Histone H4 Proteoforms: Tandem Ultraviolet-Photon and Mobility/Mass-Selected Electron Capture Dissociations

K Jeanne Dit Fouque, SA Miller, K Pham… - Analytical …, 2022 - ACS Publications
Post-translational modifications (PTMs) on intact histones play a major role in regulating
chromatin dynamics and influence biological processes such as DNA transcription …

Native top‐down mass spectrometry for higher‐order structural characterization of proteins and complexes

R Liu, S **a, H Li - Mass spectrometry reviews, 2023 - Wiley Online Library
Progress in structural biology research has led to a high demand for powerful and yet
complementary analytical tools for structural characterization of proteins and protein …

Seeing the complete picture: proteins in top-down mass spectrometry

T Habeck, F Lermyte - Essays in Biochemistry, 2023 - portlandpress.com
Top-down protein mass spectrometry can provide unique insights into protein sequence and
structure, including precise proteoform identification and study of protein–ligand and protein …

Impact of internal fragments on top-down analysis of intact proteins by 193 nm UVPD

SD Dunham, B Wei, C Lantz, JA Loo… - Journal of proteome …, 2022 - ACS Publications
193 nm ultraviolet photodissociation (UVPD) allows high sequence coverage to be obtained
for intact proteins using terminal fragments alone. However, internal fragments, those that …

Top-down protein analysis by tandem-trapped ion mobility spectrometry/mass spectrometry (tandem-TIMS/MS) coupled with ultraviolet photodissociation (UVPD) and …

FC Liu, ME Ridgeway, CA Wootton… - Journal of the …, 2023 - ACS Publications
“Top-down” proteomics analyzes intact proteins and identifies proteoforms by their intact
mass as well as the observed fragmentation pattern in tandem mass spectrometry (MS/MS) …

The Ims paradox: a perspective on structural ion mobility‐mass spectrometry

JW McCabe, MJ Hebert, M Shirzadeh… - Mass Spectrometry …, 2021 - Wiley Online Library
Studies of large proteins, protein complexes, and membrane protein complexes pose new
challenges, most notably the need for increased ion mobility (IM) and mass spectrometry …

Trapped ion mobility spectrometry, ultraviolet photodissociation, and time-of-flight mass spectrometry for gas-phase peptide isobars/isomers/conformers discrimination

SA Miller, K Jeanne Dit Fouque… - Journal of the …, 2022 - ACS Publications
Trapped ion mobility spectrometry (TIMS) when coupled with mass spectrometry (MS) offers
great advantages for the separation of isobaric, isomeric, and/or conformeric species. In the …

Sequential ion–ion reactions for enhanced gas-phase sequencing of large intact proteins in a tribrid orbitrap mass spectrometer

JT Kline, C Mullen, KR Durbin, RN Oates… - Journal of the …, 2021 - ACS Publications
Obtaining extensive sequencing of an intact protein is essential in order to simultaneously
determine both the nature and exact localization of chemical and genetic modifications …