Sequencing technologies and genome sequencing

CS Pareek, R Smoczynski, A Tretyn - Journal of applied genetics, 2011 - Springer
The high-throughput-next generation sequencing (HT-NGS) technologies are currently the
hottest topic in the field of human and animals genomics researches, which can produce …

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

N Aubin‐Horth, SCP Renn - Molecular ecology, 2009 - Wiley Online Library
Phenotypic plasticity is the development of different phenotypes from a single genotype,
depending on the environment. Such plasticity is a pervasive feature of life, is observed for …

Mouse genomic variation and its effect on phenotypes and gene regulation

TM Keane, L Goodstadt, P Danecek, MA White… - Nature, 2011 - nature.com
We report genome sequences of 17 inbred strains of laboratory mice and identify almost ten
times more variants than previously known. We use these genomes to explore the …

Fast identification and removal of sequence contamination from genomic and metagenomic datasets

R Schmieder, R Edwards - PloS one, 2011 - journals.plos.org
High-throughput sequencing technologies have strongly impacted microbiology, providing a
rapid and cost-effective way of generating draft genomes and exploring microbial diversity …

Next-generation sequencing and large genome assemblies

J Henson, G Tischler, Z Ning - Pharmacogenomics, 2012 - Taylor & Francis
The next-generation sequencing (NGS) revolution has drastically reduced time and cost
requirements for sequencing of large genomes, and also qualitatively changed the problem …

Visualizing genomes: techniques and challenges

CB Nielsen, M Cantor, I Dubchak, D Gordon, T Wang - Nature methods, 2010 - nature.com
As our ability to generate sequencing data continues to increase, data analysis is replacing
data generation as the rate-limiting step in genomics studies. Here we provide a guide to …

The next-generation sequencing technology and application

X Zhou, L Ren, Q Meng, Y Li, Y Yu, J Yu - Protein & cell, 2010 - academic.oup.com
As one of the key technologies in biomedical research, DNA sequencing has not only
improved its productivity with an exponential growth rate but also been applied to new areas …

Next-generation gap

JD McPherson - Nature methods, 2009 - nature.com
There is a growing gap between the generation of massively parallel sequencing output and
the ability to process and analyze the resulting data. New users are left to navigate a …

Next-generation sequencing and its potential impact on food microbial genomics

L Solieri, TC Dakal, P Giudici - Annals of Microbiology, 2013 - Springer
Recent efforts of researchers to elucidate the molecular mechanisms of biological systems
have been revolutionized greatly with the use of high throughput and cost-effective …

Sequencing and characterization of the FVB/NJ mouse genome

K Wong, S Bumpstead, L Van Der Weyden… - Genome biology, 2012 - Springer
Abstract Background The FVB/NJ mouse strain has its origins in a colony of outbred Swiss
mice established in 1935 at the National Institutes of Health. Mice derived from this source …