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Representation learning applications in biological sequence analysis
Although remarkable advances have been reported in high-throughput sequencing, the
ability to aptly analyze a substantial amount of rapidly generated biological …
ability to aptly analyze a substantial amount of rapidly generated biological …
[HTML][HTML] Omics data and data representations for deep learning-based predictive modeling
Medical discoveries mainly depend on the capability to process and analyze biological
datasets, which inundate the scientific community and are still expanding as the cost of next …
datasets, which inundate the scientific community and are still expanding as the cost of next …
Development and validation of an explainable machine learning-based prediction model for drug–food interactions from chemical structures
Possible drug–food constituent interactions (DFIs) could change the intended efficiency of
particular therapeutics in medical practice. The increasing number of multiple-drug …
particular therapeutics in medical practice. The increasing number of multiple-drug …
DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor
Z Xu, M Luo, W Lin, G Xue, P Wang, X **… - Briefings in …, 2021 - academic.oup.com
Accurate prediction of immunogenic peptide recognized by T cell receptor (TCR) can greatly
benefit vaccine development and cancer immunotherapy. However, identifying …
benefit vaccine development and cancer immunotherapy. However, identifying …
DNN-DTIs: Improved drug-target interactions prediction using XGBoost feature selection and deep neural network
Abstract Analysis and prediction of drug-target interactions (DTIs) play an important role in
understanding drug mechanisms, as well as drug repositioning and design. Machine …
understanding drug mechanisms, as well as drug repositioning and design. Machine …
[HTML][HTML] Brain asymmetry detection and machine learning classification for diagnosis of early dementia
NJ Herzog, GD Magoulas - Sensors, 2021 - mdpi.com
Early identification of degenerative processes in the human brain is considered essential for
providing proper care and treatment. This may involve detecting structural and functional …
providing proper care and treatment. This may involve detecting structural and functional …
An integrated neural network and SEIR model to predict Covid-19
A novel coronavirus (COVID-19), which has become a great concern for the world, was
identified first in Wuhan city in China. The rapid spread throughout the world was …
identified first in Wuhan city in China. The rapid spread throughout the world was …
A general hybrid modeling framework for systems biology applications: Combining mechanistic knowledge with deep neural networks under the SBML standard
In this paper, a computational framework is proposed that merges mechanistic modeling
with deep neural networks obeying the Systems Biology Markup Language (SBML) …
with deep neural networks obeying the Systems Biology Markup Language (SBML) …
Ssnet: A deep learning approach for protein-ligand interaction prediction
Computational prediction of Protein-Ligand Interaction (PLI) is an important step in the
modern drug discovery pipeline as it mitigates the cost, time, and resources required to …
modern drug discovery pipeline as it mitigates the cost, time, and resources required to …
Prediction of protein–ATP binding residues based on ensemble of deep convolutional neural networks and LightGBM algorithm
J Song, G Liu, J Jiang, P Zhang, Y Liang - International Journal of …, 2021 - mdpi.com
Accurately identifying protein–ATP binding residues is important for protein function
annotation and drug design. Previous studies have used classic machine-learning …
annotation and drug design. Previous studies have used classic machine-learning …