Autophagy: the master of bulk and selective recycling

RS Marshall, RD Vierstra - Annual review of plant biology, 2018 - annualreviews.org
Plants have evolved sophisticated mechanisms to recycle intracellular constituents, which
are essential for developmental and metabolic transitions; for efficient nutrient reuse; and for …

Development of therapeutic antibodies for the treatment of diseases

Z Wang, G Wang, H Lu, H Li, M Tang, A Tong - Molecular biomedicine, 2022 - Springer
Since the first monoclonal antibody drug, muromonab-CD3, was approved for marketing in
1986, 165 antibody drugs have been approved or are under regulatory review worldwide …

Lactylome analysis suggests lactylation-dependent mechanisms of metabolic adaptation in hepatocellular carcinoma

Z Yang, C Yan, J Ma, P Peng, X Ren, S Cai, X Shen… - Nature …, 2023 - nature.com
Enhanced glycolysis and accumulation of lactate is a common feature in various types of
cancer. Intracellular lactate drives a recently described type of posttranslational modification …

Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity

RH Mills, PS Dulai, Y Vázquez-Baeza, C Sauceda… - Nature …, 2022 - nature.com
Ulcerative colitis (UC) is driven by disruptions in host–microbiota homoeostasis, but current
treatments exclusively target host inflammatory pathways. To understand how host …

Microbial peptides activate tumour-infiltrating lymphocytes in glioblastoma

R Naghavian, W Faigle, P Oldrati, J Wang… - Nature, 2023 - nature.com
Microbial organisms have key roles in numerous physiological processes in the human
body and have recently been shown to modify the response to immune checkpoint …

Logomaker: beautiful sequence logos in Python

A Tareen, JB Kinney - Bioinformatics, 2020 - academic.oup.com
Sequence logos are visually compelling ways of illustrating the biological properties of DNA,
RNA and protein sequences, yet it is currently difficult to generate and customize such logos …

The regulatory enzymes and protein substrates for the lysine β-hydroxybutyrylation pathway

H Huang, D Zhang, Y Weng, K Delaney, Z Tang… - Science …, 2021 - science.org
Metabolism-mediated epigenetic changes represent an adapted mechanism for cellular
signaling, in which lysine acetylation and methylation have been the historical focus of …

UbiSite approach for comprehensive map** of lysine and N-terminal ubiquitination sites

V Akimov, I Barrio-Hernandez, SVF Hansen… - Nature structural & …, 2018 - nature.com
Ubiquitination is a post-translational modification (PTM) that is essential for balancing
numerous physiological processes. To enable delineation of protein ubiquitination at a site …

Time-resolved analysis reveals rapid dynamics and broad scope of the CBP/p300 acetylome

BT Weinert, T Narita, S Satpathy, B Srinivasan… - Cell, 2018 - cell.com
The acetyltransferases CBP and p300 are multifunctional transcriptional co-activators. Here,
we combined quantitative proteomics with CBP/p300-specific catalytic inhibitors …

Profiling PRMT methylome reveals roles of hnRNPA1 arginine methylation in RNA splicing and cell growth

W Li, Y He, J Yang, G Hu, Y Lin, T Ran, B Peng… - Nature …, 2021 - nature.com
Numerous substrates have been identified for Type I and II arginine methyltransferases
(PRMTs). However, the full substrate spectrum of the only type III PRMT, PRMT7, and its …