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Mechanisms and concepts in RNA virus population dynamics and evolution
RNA viruses are unique in their evolutionary capacity, exhibiting high mutation rates and
frequent recombination. They rapidly adapt to environmental changes, such as shifts in …
frequent recombination. They rapidly adapt to environmental changes, such as shifts in …
The strange lifestyle of multipartite viruses
Multipartite viruses have one of the most puzzling genetic organizations found in living
organisms. These viruses have several genome segments, each containing only a part of …
organisms. These viruses have several genome segments, each containing only a part of …
Selection for robust metabolism in domesticated yeasts is driven by adaptation to Hsp90 stress
Protein folding both promotes and constrains adaptive evolution. We uncover this surprising
duality in the role of the protein-folding chaperone heat shock protein 90 (Hsp90) in …
duality in the role of the protein-folding chaperone heat shock protein 90 (Hsp90) in …
The evolution of life history trade-offs in viruses
Highlights•Life history trade-offs are experienced by both eukaryotic viruses and by
phage.•Experimental evolution is a powerful method to study viral trade-offs.•Intracellular …
phage.•Experimental evolution is a powerful method to study viral trade-offs.•Intracellular …
Proofreading-deficient coronaviruses adapt for increased fitness over long-term passage without reversion of exoribonuclease-inactivating mutations
The coronavirus (CoV) RNA genome is the largest among the single-stranded positive-
sense RNA viruses. CoVs encode a proofreading 3′-to-5′ exoribonuclease within …
sense RNA viruses. CoVs encode a proofreading 3′-to-5′ exoribonuclease within …
Emergency services of viral RNAs: repair and remodeling
Reproduction of RNA viruses is typically error-prone due to the infidelity of their replicative
machinery and the usual lack of proofreading mechanisms. The error rates may be close to …
machinery and the usual lack of proofreading mechanisms. The error rates may be close to …
Existing host range mutations constrain further emergence of RNA viruses
ABSTRACT RNA viruses are capable of rapid host shifting, typically due to a point mutation
that confers expanded host range. As additional point mutations are necessary for further …
that confers expanded host range. As additional point mutations are necessary for further …
Temporally autocorrelated environmental fluctuations inhibit the evolution of stress tolerance
As global environmental conditions continue to change at an unprecedented rate, many
species will experience increases in natural and anthropogenic stress. Generally speaking …
species will experience increases in natural and anthropogenic stress. Generally speaking …
Robustness to noise in gene expression evolves despite epistatic constraints in a model of gene networks
Stochastic noise in gene expression causes variation in the development of phenotypes,
making such noise a potential target of stabilizing selection. Here, we develop a new …
making such noise a potential target of stabilizing selection. Here, we develop a new …
Experimental Evolution Studies in Φ6 Cystovirus
S Singhal, AK Balitactac, AG Nayagam… - Viruses, 2024 - mdpi.com
Experimental evolution studies, in which biological populations are evolved in a specific
environment over time, can address questions about the nature of spontaneous mutations …
environment over time, can address questions about the nature of spontaneous mutations …