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Gene regulatory network inference resources: A practical overview
Transcriptional regulation is a fundamental molecular mechanism involved in almost every
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …
Discerning molecular interactions: a comprehensive review on biomolecular interaction databases and network analysis tools
Computational analysis of biomolecular interaction networks is now gaining a lot of
importance to understand the functions of novel genes/proteins. Gene interaction (GI) …
importance to understand the functions of novel genes/proteins. Gene interaction (GI) …
Map** single-cell atlases throughout Metazoa unravels cell type evolution
Comparing single-cell transcriptomic atlases from diverse organisms can elucidate the
origins of cellular diversity and assist the annotation of new cell atlases. Yet, comparison …
origins of cellular diversity and assist the annotation of new cell atlases. Yet, comparison …
Comparative analysis of the transcriptome across distant species
The transcriptome is the readout of the genome. Identifying common features in it across
distant species can reveal fundamental principles. To this end, the ENCODE and …
distant species can reveal fundamental principles. To this end, the ENCODE and …
Comparative analyses of gene co-expression networks: Implementations and applications in the study of evolution
Similarities and differences in the associations of biological entities among species can
provide us with a better understanding of evolutionary relationships. Often the evolution of …
provide us with a better understanding of evolutionary relationships. Often the evolution of …
Expression of immunoproteasome genes is regulated by cell-intrinsic and–extrinsic factors in human cancers
Based on transcriptomic analyses of thousands of samples from The Cancer Genome Atlas,
we report that expression of constitutive proteasome (CP) genes (PSMB5, PSMB6, PSMB7) …
we report that expression of constitutive proteasome (CP) genes (PSMB5, PSMB6, PSMB7) …
Evolutionary conservation and divergence of the human brain transcriptome
Background Mouse models have allowed for the direct interrogation of genetic effects on
molecular, physiological, and behavioral brain phenotypes. However, it is unknown to what …
molecular, physiological, and behavioral brain phenotypes. However, it is unknown to what …
How to utilize comparative transcriptomics to dissect morphological diversity in plants
Comparative transcriptomics has emerged as a powerful approach that allows us to unravel
the genetic basis of organ morphogenesis and its diversification processes during evolution …
the genetic basis of organ morphogenesis and its diversification processes during evolution …
Changes in microbiota along the intestine of grass carp (Ctenopharyngodon idella): Community, interspecific interactions, and functions
The intestinal microbiota plays crucial roles in the nutrition uptake and metabolism in a
herbivorous fish, the grass carp (Ctenopharyngodon idella). Based on the 16S rRNA …
herbivorous fish, the grass carp (Ctenopharyngodon idella). Based on the 16S rRNA …
Molecular ecological network analysis reveals the effects of probiotics and florfenicol on intestinal microbiota homeostasis: an example of sea cucumber
Animal gut harbors diverse microbes that play crucial roles in the nutrition uptake,
metabolism, and the regulation of host immune responses. The intestinal microbiota …
metabolism, and the regulation of host immune responses. The intestinal microbiota …