On the Power and Challenges of Atomistic Molecular Dynamics to Investigate RNA Molecules
RNA molecules play a vital role in biological processes within the cell, with significant
implications for science and medicine. Notably, the biological functions exerted by specific …
implications for science and medicine. Notably, the biological functions exerted by specific …
Advances, Applications, and Perspectives in Small‐Angle X‐ray Scattering of RNA
JN Tants, A Schlundt - Chembiochem, 2023 - Wiley Online Library
RNAs exhibit a plethora of functions far beyond transmitting genetic information. Often, RNA
functions are entailed in their structure, be it as a regulatory switch, protein binding site, or …
functions are entailed in their structure, be it as a regulatory switch, protein binding site, or …
RNA structures and dynamics with Å resolution revealed by x-ray free-electron lasers
RNA macromolecules, like proteins, fold to assume shapes that are intimately connected to
their broadly recognized biological functions; however, because of their high charge and …
their broadly recognized biological functions; however, because of their high charge and …
Biophysical characterisation of human LincRNA-p21 sense and antisense Alu inverted repeats
Abstract Human Long Intergenic Noncoding RNA-p21 (LincRNA-p21) is a regulatory
noncoding RNA that plays an important role in promoting apoptosis. LincRNA-p21 is also …
noncoding RNA that plays an important role in promoting apoptosis. LincRNA-p21 is also …
Structural analyses of an RNA stability element interacting with poly (A)
Cis-acting RNA elements are crucial for the regulation of polyadenylated RNA stability. The
element for nuclear expression (ENE) contains a U-rich internal loop flanked by short …
element for nuclear expression (ENE) contains a U-rich internal loop flanked by short …
Modeling, simulations, and bioinformatics at the service of RNA structure
Although chemically close to DNA, RNA can adopt a wide range of structures from regular
helices to complex globular conformations, showing a complexity similar to that of proteins …
helices to complex globular conformations, showing a complexity similar to that of proteins …
Comparing state-of-the-art approaches to back-calculate SAXS spectra from atomistic molecular dynamics simulations
Small-angle X-ray scattering (SAXS) experiments are arising as an effective instrument in
the structural characterization of biomolecules in solution. However, they suffer from limited …
the structural characterization of biomolecules in solution. However, they suffer from limited …
RETRACTED: Application of the small-angle X-ray scattering technique for structural analysis studies: A review
J Li, A Jiao, S Chen, Z Wu, E Xu, Z ** - 2018 - Elsevier
This article (and corrigendum) has been found to contain data which were reported citing
improper references so that the reproducibility of the experiments and the interpretation of …
improper references so that the reproducibility of the experiments and the interpretation of …
Structure of the RNA specialized translation initiation element that recruits eIF3 to the 5′-UTR of c-Jun
Specialized translation initiation is a novel form of regulation of protein synthesis, whereby
RNA structures within the 5′-UTR regulate translation rates of specific mRNAs. Similar to …
RNA structures within the 5′-UTR regulate translation rates of specific mRNAs. Similar to …
Selective deuteration of an RNA: RNA complex for structural analysis using small-angle scattering
The structures of RNA: RNA complexes regulate many biological processes. Despite their
importance, protein-free RNA: RNA complexes represent a tiny fraction of experimentally …
importance, protein-free RNA: RNA complexes represent a tiny fraction of experimentally …