Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species

G Albani Rocchetti, CG Armstrong, T Abeli… - New …, 2021 - Wiley Online Library
Although often not collected specifically for the purposes of conservation, herbarium
specimens offer sufficient information to reconstruct parameters that are needed to …

Landscape analysis for the specimen data refinery

S Walton, L Livermore, O Bánki… - Research Ideas …, 2020 - research.manchester.ac.uk
This report reviews the current state-of-the-art applied approaches on automated tools,
services and workflows for extracting information from images of natural history specimens …

Data management challenges for artificial intelligence in plant and agricultural research

HF Williamson, J Brettschneider, M Caccamo… - …, 2023 - pmc.ncbi.nlm.nih.gov
Artificial Intelligence (AI) is increasingly used within plant science, yet it is far from being
routinely and effectively implemented in this domain. Particularly relevant to the …

Identification of herbarium specimen sheet components from high‐resolution images using deep learning

KM Thompson, R Turnbull, E Fitzgerald… - Ecology and …, 2023 - Wiley Online Library
Advanced computer vision techniques hold the potential to mobilise vast quantities of
biodiversity data by facilitating the rapid extraction of text‐and trait‐based data from …

[PDF][PDF] A complete digitization of German herbaria is possible, sensible and should be started now

T Borsch, AD Stevens, E Häffner, A Güntsch… - Research Ideas and …, 2020 - riojournal.com
Plants, fungi and algae are important components of global biodiversity and are
fundamental to all ecosystems. They are the basis for human well-being, providing food …

The specimen data refinery: a canonical workflow framework and FAIR digital object approach to speeding up digital mobilisation of natural history collections

A Hardisty, P Brack, C Goble, L Livermore, B Scott… - Data …, 2022 - direct.mit.edu
A key limiting factor in organising and using information from physical specimens curated in
natural science collections is making that information computable, with institutional …

The herbarium 2021 half–earth challenge dataset and machine learning competition

R de Lutio, JY Park, KA Watson, S D'Aronco… - Frontiers in Plant …, 2022 - frontiersin.org
Herbarium sheets present a unique view of the world's botanical history, evolution, and
biodiversity. This makes them an all–important data source for botanical research. With the …

Taxonomy 2.0: computer-aided identification tools to assist Antarctic biologists in the field and in the laboratory

T Saucède, M Eléaume, Q Jossart, C Moreau… - Antarctic …, 2021 - cambridge.org
Species inventories are essential to the implementation of conservation policies to mitigate
biodiversity loss and maintain ecosystem services and their value to the society. This is …

Harnessing large-scale herbarium image datasets through representation learning

BE Walker, A Tucker, N Nicolson - Frontiers in plant science, 2022 - frontiersin.org
The mobilization of large-scale datasets of specimen images and metadata through
herbarium digitization provide a rich environment for the application and development of …

Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections.

D Owen, Q Groom, A Hardisty… - Research Ideas and …, 2020 - orca.cardiff.ac.uk
We describe an effective approach to automated text digitisation with respect to natural
history specimen labels. These labels contain much useful data about the specimen …