Deep learning for computational biology
Technological advances in genomics and imaging have led to an explosion of molecular
and cellular profiling data from large numbers of samples. This rapid increase in biological …
and cellular profiling data from large numbers of samples. This rapid increase in biological …
Toxicity testing in the 21st century: progress in the past decade and future perspectives
D Krewski, ME Andersen, MG Tyshenko… - Archives of …, 2020 - Springer
Advances in the biological sciences have led to an ongoing paradigm shift in toxicity testing
based on expanded application of high-throughput in vitro screening and in silico methods …
based on expanded application of high-throughput in vitro screening and in silico methods …
DeepTox: toxicity prediction using deep learning
The Tox21 Data Challenge has been the largest effort of the scientific community to compare
computational methods for toxicity prediction. This challenge comprised 12,000 …
computational methods for toxicity prediction. This challenge comprised 12,000 …
Deep learning for drug response prediction in cancer
Predicting the sensitivity of tumors to specific anti-cancer treatments is a challenge of
paramount importance for precision medicine. Machine learning (ML) algorithms can be …
paramount importance for precision medicine. Machine learning (ML) algorithms can be …
A microfluidics platform for combinatorial drug screening on cancer biopsies
Screening drugs on patient biopsies from solid tumours has immense potential, but is
challenging due to the small amount of available material. To address this, we present here …
challenging due to the small amount of available material. To address this, we present here …
[HTML][HTML] The US Federal Tox21 Program: A strategic and operational plan for continued leadership
Background The traditional approaches to toxicity testing have posed multiple challenges for
evaluating the safety of industrial and environmental chemicals, pesticides, food additives …
evaluating the safety of industrial and environmental chemicals, pesticides, food additives …
Big data in basic and translational cancer research
Historically, the primary focus of cancer research has been molecular and clinical studies of
a few essential pathways and genes. Recent years have seen the rapid accumulation of …
a few essential pathways and genes. Recent years have seen the rapid accumulation of …
A data-driven approach to predicting successes and failures of clinical trials
Over the past decade, the rate of drug attrition due to clinical trial failures has risen
substantially. Unfortunately it is difficult to identify compounds that have unfavorable toxicity …
substantially. Unfortunately it is difficult to identify compounds that have unfavorable toxicity …
Map** the functional landscape of T cell receptor repertoires by single-T cell transcriptomics
Many experimental and bioinformatics approaches have been developed to characterize the
human T cell receptor (TCR) repertoire. However, the unknown functional relevance of TCR …
human T cell receptor (TCR) repertoire. However, the unknown functional relevance of TCR …
Modelling the Tox21 10 K chemical profiles for in vivo toxicity prediction and mechanism characterization
Target-specific, mechanism-oriented in vitro assays post a promising alternative to
traditional animal toxicology studies. Here we report the first comprehensive analysis of the …
traditional animal toxicology studies. Here we report the first comprehensive analysis of the …