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AI in drug discovery and its clinical relevance
The COVID-19 pandemic has emphasized the need for novel drug discovery process.
However, the journey from conceptualizing a drug to its eventual implementation in clinical …
However, the journey from conceptualizing a drug to its eventual implementation in clinical …
Machine-learning methods for ligand–protein molecular docking
K Crampon, A Giorkallos, M Deldossi, S Baud… - Drug discovery today, 2022 - Elsevier
Artificial intelligence (AI) is often presented as a new Industrial Revolution. Many domains
use AI, including molecular simulation for drug discovery. In this review, we provide an …
use AI, including molecular simulation for drug discovery. In this review, we provide an …
Efficient and accurate large library ligand docking with KarmaDock
Ligand docking is one of the core technologies in structure-based virtual screening for drug
discovery. However, conventional docking tools and existing deep learning tools may suffer …
discovery. However, conventional docking tools and existing deep learning tools may suffer …
Physics-inspired structural representations for molecules and materials
The first step in the construction of a regression model or a data-driven analysis, aiming to
predict or elucidate the relationship between the atomic-scale structure of matter and its …
predict or elucidate the relationship between the atomic-scale structure of matter and its …
Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer
The past few years have witnessed enormous progress toward applying machine learning
approaches to the development of protein–ligand scoring functions. However, the robust …
approaches to the development of protein–ligand scoring functions. However, the robust …
InteractionGraphNet: a novel and efficient deep graph representation learning framework for accurate protein–ligand interaction predictions
Accurate quantification of protein–ligand interactions remains a key challenge to structure-
based drug design. However, traditional machine learning (ML)-based methods based on …
based drug design. However, traditional machine learning (ML)-based methods based on …
A practical guide to machine-learning scoring for structure-based virtual screening
Abstract Structure-based virtual screening (SBVS) via docking has been used to discover
active molecules for a range of therapeutic targets. Chemical and protein data sets that …
active molecules for a range of therapeutic targets. Chemical and protein data sets that …
A survey on deep learning in medicine: Why, how and when?
New technologies are transforming medicine, and this revolution starts with data. Health
data, clinical images, genome sequences, data on prescribed therapies and results …
data, clinical images, genome sequences, data on prescribed therapies and results …
[HTML][HTML] Protein–ligand docking in the machine-learning era
Molecular docking plays a significant role in early-stage drug discovery, from structure-
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …
Advancing ligand docking through deep learning: challenges and prospects in virtual screening
Conspectus Molecular docking, also termed ligand docking (LD), is a pivotal element of
structure-based virtual screening (SBVS) used to predict the binding conformations and …
structure-based virtual screening (SBVS) used to predict the binding conformations and …