Methods and applications for single-cell and spatial multi-omics

K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …

Single-cell proteomics enabled by next-generation sequencing or mass spectrometry

HM Bennett, W Stephenson, CM Rose, S Darmanis - Nature Methods, 2023 - nature.com
In the last decade, single-cell RNA sequencing routinely performed on large numbers of
single cells has greatly advanced our understanding of the underlying heterogeneity of …

[HTML][HTML] What is a cell type and how to define it?

H Zeng - Cell, 2022 - cell.com
Cell types are the basic functional units of an organism. Cell types exhibit diverse
phenotypic properties at multiple levels, making them challenging to define, categorize, and …

Spatial biology of cancer evolution

Z Seferbekova, A Lomakin, LR Yates… - Nature Reviews …, 2023 - nature.com
The natural history of cancers can be understood through the lens of evolution given that the
driving forces of cancer development are mutation and selection of fitter clones. Cancer …

Single-cell lipidomics enabled by dual-polarity ionization and ion mobility-mass spectrometry imaging

H Zhang, Y Liu, L Fields, X Shi, P Huang, H Lu… - Nature …, 2023 - nature.com
Single-cell (SC) analysis provides unique insight into individual cell dynamics and cell-to-
cell heterogeneity. Here, we utilize trapped ion mobility separation coupled with dual …

Conditioning of the immune system by the microbiome

DB Graham, RJ Xavier - Trends in Immunology, 2023 - cell.com
The human intestinal microbiome has coevolved with its host to establish a stable
homeostatic relationship with hallmark features of mutualistic symbioses, yet the mechanistic …

Spatial proteomics identifies JAKi as treatment for a lethal skin disease

TM Nordmann, H Anderton, A Hasegawa, L Schweizer… - Nature, 2024 - nature.com
Toxic epidermal necrolysis (TEN) is a fatal drug-induced skin reaction triggered by common
medications and is an emerging public health issue,–. Patients with TEN undergo severe …

Visualization of metabolites and microbes at high spatial resolution using MALDI mass spectrometry imaging and in situ fluorescence labeling

P Bourceau, B Geier, V Suerdieck, T Bien… - Nature …, 2023 - nature.com
Label-free molecular imaging techniques such as matrix-assisted laser desorption ionization
mass spectrometry imaging (MALDI-MSI) enable the direct and simultaneous map** of …

Spatial multi-omics: deciphering technological landscape of integration of multi-omics and its applications

X Liu, T Peng, M Xu, S Lin, B Hu, T Chu, B Liu… - Journal of Hematology & …, 2024 - Springer
The emergence of spatial multi-omics has helped address the limitations of single-cell
sequencing, which often leads to the loss of spatial context among cell populations …

SingPro: a knowledge base providing single-cell proteomic data

X Lian, Y Zhang, Y Zhou, X Sun, S Huang… - Nucleic Acids …, 2024 - academic.oup.com
Single-cell proteomics (SCP) has emerged as a powerful tool for detecting cellular
heterogeneity, offering unprecedented insights into biological mechanisms that are masked …