Tree edit distance: Robust and memory-efficient

M Pawlik, N Augsten - Information Systems, 2016 - Elsevier
Hierarchical data are often modelled as trees. An interesting query identifies pairs of similar
trees. The standard approach to tree similarity is the tree edit distance, which has …

RTED: a robust algorithm for the tree edit distance

M Pawlik, N Augsten - arxiv preprint arxiv:1201.0230, 2011 - arxiv.org
We consider the classical tree edit distance between ordered labeled trees, which is defined
as the minimum-cost sequence of node edit operations that transform one tree into another …

[LIVRE][B] Algorithms on trees and graphs

G Valiente - 2002 - Springer
The notion of graph which is most useful in computer science is that of a directed graph or
just a graph. A graph is a combinatorial structure consisting of a finite nonempty set of …

Efficient computation of the tree edit distance

M Pawlik, N Augsten - ACM Transactions on Database Systems (TODS), 2015 - dl.acm.org
We consider the classical tree edit distance between ordered labelled trees, which is
defined as the minimum-cost sequence of node edit operations that transform one tree into …

A survey on tree matching and XML retrieval

MA Tahraoui, K Pinel-Sauvagnat, C Laitang… - Computer Science …, 2013 - Elsevier
With the increasing number of available XML documents, numerous approaches for retrieval
have been proposed in the literature. They usually use the tree representation of documents …

Introduction to RNA secondary structure comparison

S Schirmer, Y Ponty, R Giegerich - RNA Sequence, Structure, and …, 2014 - Springer
Many methods have been proposed for RNA secondary structure comparison, and new
ones are still being developed. In this chapter, we first consider structure representations …

X-TED: Massive Parallelization of Tree Edit Distance

D Fan, R Lee, X Zhang - Proceedings of the VLDB Endowment, 2024 - dl.acm.org
The tree edit distance (TED) has been found in a wide spectrum of applications in artificial
intelligence, bioinformatics, and other areas, which serves as a metric to quantify the …

Alignments of RNA structures.

G Blin, A Denise, S Dulucq, C Herrbach… - IEEE/ACM Transactions …, 2010 - hal.science
We describe a theoretical unifying framework to express the comparison of RNA structures,
which we call alignment hierarchy. This framework relies on the definition of common …

Breaking the cubic barrier for (unweighted) tree edit distance

X Mao - SIAM Journal on Computing, 2023 - SIAM
The (unweighted) tree edit distance problem for node trees asks to compute a measure of
dissimilarity between two rooted trees with node labels. The current best algorithm from …

A new perspective on the tree edit distance

S Schwarz, M Pawlik, N Augsten - … 2017, Munich, Germany, October 4-6 …, 2017 - Springer
The tree edit distance (TED), defined as the minimum-cost sequence of node operations that
transform one tree into another, is a well-known distance measure for hierarchical data …