[PDF][PDF] Genome-wide association study of complex traits in maize detects genomic regions and genes for increasing grain yield and grain quality

Y Dwiningsih, J Al-Kahtani - Advance Sustainable Science …, 2022 - academia.edu
This review describes the current status of genome-wide association study (GWAS) of the
major crops in maize (Zea mays L.) concentrate on performing association map** as a …

Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

PG Meirmans - Molecular Ecology Resources, 2020 - Wiley Online Library
Abstract genodive version 3.0 is a user‐friendly program for the analysis of population
genetic data. This version presents a major update from the previous version and now offers …

St AMPP: An R package for calculation of genetic differentiation and structure of mixed‐ploidy level populations

LW Pembleton, NOI Cogan… - Molecular ecology …, 2013 - Wiley Online Library
Abstract Statistical Analysis of Mixed‐Ploidy Populations (St AMPP) is a freely available R
package for calculation of population structure and differentiation based on single …

TASSEL: software for association map** of complex traits in diverse samples

PJ Bradbury, Z Zhang, DE Kroon, TM Casstevens… - …, 2007 - academic.oup.com
Association analyses that exploit the natural diversity of a genome to map at very high
resolutions are becoming increasingly important. In most studies, however, researchers …

A unified mixed-model method for association map** that accounts for multiple levels of relatedness

J Yu, G Pressoir, WH Briggs, I Vroh Bi, M Yamasaki… - Nature …, 2006 - nature.com
As population structure can result in spurious associations, it has constrained the use of
association studies in human and plant genetics. Association map**, however, holds …

coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients

J Wang - Molecular ecology resources, 2011 - Wiley Online Library
The software package coancestry implements seven relatedness estimators and three
inbreeding estimators to estimate relatedness and inbreeding coefficients from multilocus …

Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments

S Sukumaran, S Dreisigacker, M Lopes… - Theoretical and applied …, 2015 - Springer
Key message Through genome-wide association study, loci for grain yield and yield
components were identified in chromosomes 5A and 6A in spring wheat (Triticum aestivum) …

Landscape genetics: combining landscape ecology and population genetics

S Manel, MK Schwartz, G Luikart, P Taberlet - Trends in ecology & …, 2003 - cell.com
Understanding the processes and patterns of gene flow and local adaptation requires a
detailed knowledge of how landscape characteristics structure populations. This …

Efficient control of population structure in model organism association map**

HM Kang, NA Zaitlen, CM Wade, A Kirby… - Genetics, 2008 - academic.oup.com
Genomewide association map** in model organisms such as inbred mouse strains is a
promising approach for the identification of risk factors related to human diseases. However …