NCBI Taxonomy: a comprehensive update on curation, resources and tools

CL Schoch, S Ciufo, M Domrachev, CL Hotton… - Database, 2020 - academic.oup.com
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …

New scientific discoveries: Plants and fungi

M Cheek, E Nic Lughadha, P Kirk, H Lindon… - Plants, People …, 2020 - Wiley Online Library
Societal Impact Statement Research and publication of the planet's remaining plant and
fungal species as yet unknown to science is essential if we are to address the United …

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

S Põlme, K Abarenkov, R Henrik Nilsson, BD Lindahl… - Fungal diversity, 2020 - Springer
The cryptic lifestyle of most fungi necessitates molecular identification of the guild in
environmental studies. Over the past decades, rapid development and affordability of …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Fungal evolution: diversity, taxonomy and phylogeny of the Fungi

MA Naranjo‐Ortiz, T Gabaldón - Biological Reviews, 2019 - Wiley Online Library
The fungal kingdom comprises a hyperdiverse clade of heterotrophic eukaryotes
characterized by the presence of a chitinous cell wall, the loss of phagotrophic capabilities …

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases

ML Richard, H Sokol - Nature Reviews Gastroenterology & Hepatology, 2019 - nature.com
The gut microbiota is a dense and diverse ecosystem that is involved in many physiological
functions as well as in disease pathogenesis. It is dominated by bacteria, which have been …

Methods used for the study of endophytic fungi: a review on methodologies and challenges, and associated tips

JBA Dos Reis, AS Lorenzi, HMM do Vale - Archives of Microbiology, 2022 - Springer
Endophytic fungi are microorganisms that colonize the interior of plant tissues (eg leaves,
seeds, stem, trunk, roots, fruits, flowers) in intracellular and/or extracellular spaces without …

Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

NA O'Leary, MW Wright, JR Brister, S Ciufo… - Nucleic acids …, 2016 - academic.oup.com
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains
and curates a publicly available database of annotated genomic, transcript, and protein …

Notes, outline and divergence times of Basidiomycota

MQ He, RL Zhao, KD Hyde, D Begerow, M Kemler… - Fungal diversity, 2019 - Springer
The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in
species numbers to the Ascomycota. The present work provides an overview of all validly …