Molecular markers from the transcribed/expressed region of the genome in higher plants

PK Gupta, S Rustgi - Functional & integrative genomics, 2004 - Springer
In recent years, molecular marker technology in higher plants has witnessed a shift from the
so-called random DNA markers (RDMs), developed in the past arbitrarily from genomic DNA …

Plant tolerance to drought stress with emphasis on wheat

S Adel, N Carels - Plants, 2023 - mdpi.com
Environmental stresses, such as drought, have negative effects on crop yield. Drought is a
stress whose impact tends to increase in some critical regions. However, the worldwide …

Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential

S Temnykh, G DeClerck, A Lukashova… - Genome …, 2001 - genome.cshlp.org
A total of 57.8 Mb of publicly available rice (Oryza sativa L.) DNA sequence was searched to
determine the frequency and distribution of different simple sequence repeats (SSRs) in the …

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

R Garg, RK Patel, AK Tyagi, M Jain - DNA research, 2011 - academic.oup.com
Chickpea ranks third among the food legume crops production in the world. However, the
genomic resources available for chickpea are still very limited. In the present study, the …

A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales

MR McKain, H Tang, JR McNeal… - Genome biology and …, 2016 - academic.oup.com
Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …

The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms

ED Akhunov, AW Goodyear, S Geng, LL Qi… - Genome …, 2003 - genome.cshlp.org
Genes detected by wheat expressed sequence tags (ESTs) were mapped into chromosome
bins delineated by breakpoints of 159 overlap** deletions. These data were used to …

DNA helix: the importance of being GC‐rich

AE Vinogradov - Nucleic acids research, 2003 - academic.oup.com
A new explanation for the emergence of heavy (GC‐rich) isochores is proposed, based on
the study of thermostability, bendability, ability to B–Z transition and curvature of the DNA …

Patterns of codon usage bias in three dicot and four monocot plant species

A Kawabe, NT Miyashita - Genes & genetic systems, 2003 - jstage.jst.go.jp
Codon usage in nuclear genes of four monocot and three dicot species was analyzed to find
general patterns in codon choice of plant species. Codon bias was correlated with GC …

De novo sequencing and comparative analysis of holy and sweet basil transcriptomes

S Rastogi, S Meena, A Bhattacharya, S Ghosh… - BMC genomics, 2014 - Springer
Background Ocimum L. of family Lamiaceae is a well known genus for its ethnobotanical,
medicinal and aromatic properties, which are attributed to innumerable phenylpropanoid …

A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales

JC Kuhl, F Cheung, Q Yuan, W Martin, Y Zewdie… - The Plant …, 2004 - academic.oup.com
Enormous genomic resources have been developed for plants in the monocot order Poales;
however, it is not clear how representative the Poales are for the monocots as a whole. The …