Genomic prediction of (mal) adaptation across current and future climatic landscapes

T Capblancq, MC Fitzpatrick, RA Bay… - Annual Review of …, 2020 - annualreviews.org
Signals of local adaptation have been found in many plants and animals, highlighting the
heterogeneity in the distribution of adaptive genetic variation throughout species ranges. In …

Enhancing genetic gain in the era of molecular breeding

Y Xu, P Li, C Zou, Y Lu, C **: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …
JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenoty** strategies are necessary to empower high-
resolution linkage map** and genome-wide association studies and for training genomic …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

A deep convolutional neural network approach for predicting phenotypes from genotypes

W Ma, Z Qiu, J Song, J Li, Q Cheng, J Zhai, C Ma - Planta, 2018 - Springer
Main conclusion Deep learning is a promising technology to accurately select individuals
with high phenotypic values based on genotypic data. Abstract Genomic selection (GS) is a …

Quantitative genetics and genomics converge to accelerate forest tree breeding

D Grattapaglia, OB Silva-Junior, RT Resende… - Frontiers in plant …, 2018 - frontiersin.org
Forest tree breeding has been successful at delivering genetically improved material for
multiple traits based on recurrent cycles of selection, mating, and testing. However, long …

Multiple-trait genomic selection methods increase genetic value prediction accuracy

Y Jia, JL Jannink - Genetics, 2012 - academic.oup.com
Genetic correlations between quantitative traits measured in many breeding programs are
pervasive. These correlations indicate that measurements of one trait carry information on …

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …

Haploids: constraints and opportunities in plant breeding

SL Dwivedi, AB Britt, L Tripathi, S Sharma… - Biotechnology …, 2015 - Elsevier
The discovery of haploids in higher plants led to the use of doubled haploid (DH) technology
in plant breeding. This article provides the state of the art on DH technology including the …