The logic of virus evolution

EV Koonin, VV Dolja, M Krupovic - Cell host & microbe, 2022 - cell.com
Viruses are obligate intracellular parasites. Despite their dependence on host cells, viruses
are evolutionarily autonomous, with their own genomes and evolutionary trajectories locked …

Dali server: structural unification of protein families

L Holm - Nucleic acids research, 2022 - academic.oup.com
Protein structure is key to understanding biological function. Structure comparison deciphers
deep phylogenies, providing insight into functional conservation and functional shifts during …

The LUCA and its complex virome

M Krupovic, VV Dolja, EV Koonin - Nature Reviews Microbiology, 2020 - nature.com
The last universal cellular ancestor (LUCA) is the most recent population of organisms from
which all cellular life on Earth descends. The reconstruction of the genome and phenotype …

DALI shines a light on remote homologs: One hundred discoveries

L Holm, A Laiho, P Törönen, M Salgado - Protein Science, 2023 - Wiley Online Library
Structural comparison reveals remote homology that often fails to be detected by sequence
comparison. The DALI web server (http://ekhidna2. biocenter. helsinki. fi/dali) is a platform …

Sourcing thermotolerant poly (ethylene terephthalate) hydrolase scaffolds from natural diversity

E Erickson, JE Gado, L Avilán, F Bratti… - Nature …, 2022 - nature.com
Enzymatic deconstruction of poly (ethylene terephthalate)(PET) is under intense
investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent …

Structure, lipid scrambling activity and role in autophagosome formation of ATG9A

S Maeda, H Yamamoto, LN Kinch, CM Garza… - Nature structural & …, 2020 - nature.com
De novo formation of the double-membrane compartment autophagosome is seeded by
small vesicles carrying membrane protein autophagy-related 9 (ATG9), the function of which …

cGAS-like receptors sense RNA and control 3′2′-cGAMP signalling in Drosophila

KM Slavik, BR Morehouse, AE Ragucci, W Zhou, X Ai… - Nature, 2021 - nature.com
Abstract Cyclic GMP–AMP synthase (cGAS) is a cytosolic DNA sensor that produces the
second messenger cG [2′–5′] pA [3′–5′] p (2′ 3′-cGAMP) and controls activation of …

Structures and mechanism of the plant PIN-FORMED auxin transporter

KL Ung, M Winkler, L Schulz, M Kolb, DP Janacek… - Nature, 2022 - nature.com
Auxins are hormones that have central roles and control nearly all aspects of growth and
development in plants,–. The proteins in the PIN-FORMED (PIN) family (also known as the …

Cryo-EM structure of a type IV secretion system

K Macé, AK Vadakkepat, A Redzej, N Lukoyanova… - Nature, 2022 - nature.com
Bacterial conjugation is the fundamental process of unidirectional transfer of DNAs, often
plasmid DNAs, from a donor cell to a recipient cell. It is the primary means by which …

Molecular architecture of the human caveolin-1 complex

JC Porta, B Han, A Gulsevin, JM Chung, Y Peskova… - Science …, 2022 - science.org
Membrane-sculpting proteins shape the morphology of cell membranes and facilitate
remodeling in response to physiological and environmental cues. Complexes of the …