A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Recipe for a general, powerful, scalable graph transformer

L Rampášek, M Galkin, VP Dwivedi… - Advances in …, 2022 - proceedings.neurips.cc
We propose a recipe on how to build a general, powerful, scalable (GPS) graph Transformer
with linear complexity and state-of-the-art results on a diverse set of benchmarks. Graph …

Digress: Discrete denoising diffusion for graph generation

C Vignac, I Krawczuk, A Siraudin, B Wang… - arxiv preprint arxiv …, 2022 - arxiv.org
This work introduces DiGress, a discrete denoising diffusion model for generating graphs
with categorical node and edge attributes. Our model utilizes a discrete diffusion process …

Long range graph benchmark

VP Dwivedi, L Rampášek, M Galkin… - Advances in …, 2022 - proceedings.neurips.cc
Abstract Graph Neural Networks (GNNs) that are based on the message passing (MP)
paradigm generally exchange information between 1-hop neighbors to build node …

Graph inductive biases in transformers without message passing

L Ma, C Lin, D Lim, A Romero-Soriano… - International …, 2023 - proceedings.mlr.press
Transformers for graph data are increasingly widely studied and successful in numerous
learning tasks. Graph inductive biases are crucial for Graph Transformers, and previous …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Data augmentation for deep graph learning: A survey

K Ding, Z Xu, H Tong, H Liu - ACM SIGKDD Explorations Newsletter, 2022 - dl.acm.org
Graph neural networks, a powerful deep learning tool to model graph-structured data, have
demonstrated remarkable performance on numerous graph learning tasks. To address the …

Understanding and extending subgraph gnns by rethinking their symmetries

F Frasca, B Bevilacqua… - Advances in Neural …, 2022 - proceedings.neurips.cc
Subgraph GNNs are a recent class of expressive Graph Neural Networks (GNNs) which
model graphs as collections of subgraphs. So far, the design space of possible Subgraph …

Weisfeiler and lehman go cellular: Cw networks

C Bodnar, F Frasca, N Otter, Y Wang… - Advances in neural …, 2021 - proceedings.neurips.cc
Abstract Graph Neural Networks (GNNs) are limited in their expressive power, struggle with
long-range interactions and lack a principled way to model higher-order structures. These …