Aged mesenchymal stem cells and inflammation: from pathology to potential therapeutic strategies

X Yang, Y Wang, V Rovella, E Candi, W Jia… - Biology Direct, 2023 - Springer
Natural ageing of organisms and corresponding age-related diseases result mainly from
stem cell ageing and “inflammaging”. Mesenchymal stem cells (MSCs) exhibit very high …

Chondrocyte homeostasis and differentiation: Transcriptional Control and Signaling in Healthy and osteoarthritic conditions

YM Michelacci, RYA Baccarin, NNP Rodrigues - Life, 2023 - mdpi.com
Chondrocytes are the main cell type in articular cartilage. They are embedded in an
avascular, abundant, and specialized extracellular matrix (ECM). Chondrocytes are …

Stiff extracellular matrix drives the differentiation of mesenchymal stem cells toward osteogenesis by the multiscale 3D genome reorganization

J Na, C Tai, Z Wang, Z Yang, X Chen, J Zhang… - Biomaterials, 2025 - Elsevier
Extracellular matrix (ECM) stiffness is a major driver of stem cell fate. However, the
involvement of the three-dimensional (3D) genomic reorganization in response to ECM …

Dynamic alternations of three-dimensional chromatin architecture contribute to phenotypic characteristics of breast muscle in chicken

Z Wang, W Tian, Y Guo, D Wang, Y Zhang… - Communications …, 2024 - nature.com
Breast muscle growth rate and intramuscular fat (IMF) content show apparent differences
between fast-growing broilers and slow-growing indigenous chickens. However, the …

High-throughput functional dissection of noncoding SNPs with biased allelic enhancer activity for insulin resistance-relevant phenotypes

YY Duan, XF Chen, RJ Zhu, YY Jia, XT Huang… - The American Journal of …, 2023 - cell.com
Most of the single-nucleotide polymorphisms (SNPs) associated with insulin resistance (IR)-
relevant phenotypes by genome-wide association studies (GWASs) are located in …

Emerging RUNX2-mediated gene regulatory mechanisms consisting of multi-layered regulatory networks in skeletal development

H Hojo - International Journal of Molecular Sciences, 2023 - mdpi.com
Skeletal development is tightly coordinated by chondrocytes and osteoblasts, which are
derived from skeletal progenitors, and distinct cell-type gene regulatory programs underlie …

Integrative high-throughput enhancer surveying and functional verification divulges a YY2-condensed regulatory axis conferring risk for osteoporosis

XF Chen, YY Duan, YY Jia, QH Dong, W Shi, Y Zhang… - Cell Genomics, 2024 - cell.com
The precise roles of chromatin organization at osteoporosis risk loci remain largely elusive.
Here, we combined chromatin interaction conformation (Hi-C) profiling and self-transcribing …

Systematic functional characterization of non-coding regulatory SNPs associated with central obesity

SS Dong, YY Duan, RJ Zhu, YY Jia, JX Chen… - The American Journal of …, 2025 - cell.com
Central obesity is associated with higher risk of develo** a wide range of diseases
independent of overall obesity. Genome-wide association studies (GWASs) have identified …

Integrated genomics approaches identify transcriptional mediators and epigenetic responses to Afghan desert particulate matter in small airway epithelial cells

A Gupta, SK Sasse, R Berman… - Physiological …, 2022 - journals.physiology.org
Military Deployment to Southwest Asia and Afghanistan and exposure to toxic airborne
particulates have been associated with an increased risk of develo** respiratory disease …

Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early …

H Castillo, P Hanna, LM Sachs, N Buisine, F Godoy… - Cells & Development, 2024 - Elsevier
While understanding the genetic underpinnings of osteogenesis has far-reaching
implications for skeletal diseases and evolution, a comprehensive characterization of the …