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[HTML][HTML] Metabolomics and multi-omics integration: a survey of computational methods and resources
As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …
and omics modalities, multi-omics integration is becoming a critical component of …
Introducing the FAIR Principles for research software
Research software is a fundamental and vital part of research, yet significant challenges to
discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the …
discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the …
A comparison of single-cell trajectory inference methods
Trajectory inference approaches analyze genome-wide omics data from thousands of single
cells and computationally infer the order of these cells along developmental trajectories …
cells and computationally infer the order of these cells along developmental trajectories …
Towards FAIR principles for research software
AL Lamprecht, L Garcia, M Kuzak, C Martinez… - Data …, 2020 - journals.sagepub.com
The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility,
interoperability and reusability of digital research objects for both humans and machines …
interoperability and reusability of digital research objects for both humans and machines …
Big data in drug discovery
Abstract Interpretation of Big Data in the drug discovery community should enhance project
timelines and reduce clinical attrition through improved early decision making. The issues …
timelines and reduce clinical attrition through improved early decision making. The issues …
A large-scale study on research code quality and execution
This article presents a study on the quality and execution of research code from publicly-
available replication datasets at the Harvard Dataverse repository. Research code is …
available replication datasets at the Harvard Dataverse repository. Research code is …
Flexible automation accelerates materials discovery
Automated experiments can accelerate research and development.'Flexible
automation'enables the cost-and time-effective design, construction and reconfiguration of …
automation'enables the cost-and time-effective design, construction and reconfiguration of …
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of
chromatin by allowing Hi-C data processing, analysis and visualization. With the Galaxy …
chromatin by allowing Hi-C data processing, analysis and visualization. With the Galaxy …
Development of the Community Water Model (CWatM v1. 04) A high-resolution hydrological model for global and regional assessment of integrated water resources …
We develop a new large-scale hydrological and water resources model, the Community
Water Model (CWatM), which can simulate hydrology both globally and regionally at …
Water Model (CWatM), which can simulate hydrology both globally and regionally at …
[HTML][HTML] BornAgain: software for simulating and fitting grazing-incidence small-angle scattering
G Pospelov, W Van Herck, J Burle… - Applied …, 2020 - journals.iucr.org
BornAgain is a free and open-source multi-platform software framework for simulating and
fitting X-ray and neutron reflectometry, off-specular scattering, and grazing-incidence small …
fitting X-ray and neutron reflectometry, off-specular scattering, and grazing-incidence small …