Transformers in medical imaging: A survey

F Shamshad, S Khan, SW Zamir, MH Khan… - Medical Image …, 2023 - Elsevier
Following unprecedented success on the natural language tasks, Transformers have been
successfully applied to several computer vision problems, achieving state-of-the-art results …

U-net and its variants for medical image segmentation: A review of theory and applications

N Siddique, S Paheding, CP Elkin… - IEEE access, 2021 - ieeexplore.ieee.org
U-net is an image segmentation technique developed primarily for image segmentation
tasks. These traits provide U-net with a high utility within the medical imaging community …

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

NF Greenwald, G Miller, E Moen, A Kong, A Kagel… - Nature …, 2022 - nature.com
A principal challenge in the analysis of tissue imaging data is cell segmentation—the task of
identifying the precise boundary of every cell in an image. To address this problem we …

Lizard: A large-scale dataset for colonic nuclear instance segmentation and classification

S Graham, M Jahanifar, A Azam… - Proceedings of the …, 2021 - openaccess.thecvf.com
The development of deep segmentation models for computational pathology (CPath) can
help foster the investigation of interpretable morphological biomarkers. Yet, there is a major …

A comprehensive review of deep learning in colon cancer

I Pacal, D Karaboga, A Basturk, B Akay… - Computers in Biology …, 2020 - Elsevier
Deep learning has emerged as a leading machine learning tool in object detection and has
attracted attention with its achievements in progressing medical image analysis …

A foundation model for joint segmentation, detection and recognition of biomedical objects across nine modalities

T Zhao, Y Gu, J Yang, N Usuyama, HH Lee, S Kiblawi… - Nature …, 2024 - nature.com
Biomedical image analysis is fundamental for biomedical discovery. Holistic image analysis
comprises interdependent subtasks such as segmentation, detection and recognition, which …

MoNuSAC2020: A multi-organ nuclei segmentation and classification challenge

R Verma, N Kumar, A Patil, NC Kurian… - … on Medical Imaging, 2021 - ieeexplore.ieee.org
Detecting various types of cells in and around the tumor matrix holds a special significance
in characterizing the tumor micro-environment for cancer prognostication and research …

A large-scale synthetic pathological dataset for deep learning-enabled segmentation of breast cancer

K Ding, M Zhou, H Wang, O Gevaert, D Metaxas… - Scientific Data, 2023 - nature.com
The success of training computer-vision models heavily relies on the support of large-scale,
real-world images with annotations. Yet such an annotation-ready dataset is difficult to …

Histopathology whole slide image analysis with heterogeneous graph representation learning

TH Chan, FJ Cendra, L Ma, G Yin… - Proceedings of the …, 2023 - openaccess.thecvf.com
Graph-based methods have been extensively applied to whole slide histopathology image
(WSI) analysis due to the advantage of modeling the spatial relationships among different …

[HTML][HTML] Cellvit: Vision transformers for precise cell segmentation and classification

F Hörst, M Rempe, L Heine, C Seibold, J Keyl… - Medical Image …, 2024 - Elsevier
Nuclei detection and segmentation in hematoxylin and eosin-stained (H&E) tissue images
are important clinical tasks and crucial for a wide range of applications. However, it is a …