The causes and consequences of subgenome dominance in hybrids and recent polyploids

KA Bird, R VanBuren, JR Puzey, PP Edger - New Phytologist, 2018 - Wiley Online Library
Contents Summary 87 I. Introduction 87 II. Evolution in action: subgenome dominance within
newly formed hybrids and polyploids 88 III. Summary and future directions 90 …

Exome sequencing highlights the role of wild-relative introgression in sha** the adaptive landscape of the wheat genome

F He, R Pasam, F Shi, S Kant, G Keeble-Gagnere… - Nature …, 2019 - nature.com
Introgression is a potential source of beneficial genetic diversity. The contribution of
introgression to adaptive evolution and improvement of wheat as it was disseminated …

Paramecium Genetics, Genomics, and Evolution

H Long, P Johri, JF Gout, J Ni, Y Hao… - Annual review of …, 2023 - annualreviews.org
The ciliate genus Paramecium served as one of the first model systems in microbial
eukaryotic genetics, contributing much to the early understanding of phenomena as diverse …

Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the Cryptic Paramecium Complex

JF Gout, Y Hao, P Johri, O Arnaiz… - Molecular biology …, 2023 - academic.oup.com
Whole-genome duplications (WGDs) have shaped the gene repertoire of many eukaryotic
lineages. The redundancy created by WGDs typically results in a phase of massive gene …

The genomes of the allohexaploid Echinochloa crus-galli and its progenitors provide insights into polyploidization-driven adaptation

CY Ye, D Wu, L Mao, L Jia, J Qiu, S Lao, M Chen… - Molecular Plant, 2020 - cell.com
The hexaploid species Echinochloa crus-galli is one of the most detrimental weeds in crop
fields, especially in rice paddies. Its evolutionary history is similar to that of bread wheat …

Adaptation and phenotypic diversification in Arabidopsis through loss-of-function mutations in protein-coding genes

YC Xu, XM Niu, XX Li, W He, JF Chen, YP Zou… - The Plant …, 2019 - academic.oup.com
According to the less-is-more hypothesis, gene loss is an engine for evolutionary change.
Loss-of-function (LoF) mutations resulting in the natural knockout of protein-coding genes …

Expression Partitioning of Duplicate Genes at Single Cell Resolution in Arabidopsis Roots

JE Coate, AD Farmer, JW Schiefelbein… - Frontiers in …, 2020 - frontiersin.org
Gene duplication is a key evolutionary phenomenon, prevalent in all organisms but
particularly so in plants, where whole genome duplication (WGD; polyploidy) is a major force …

Evolutionary patterns of nucleotide substitution rates in plastid genomes of Quercus

X Li, Y Li, SP Sylvester, M Zang… - Ecology and …, 2021 - Wiley Online Library
Molecular evolution, including nucleotide substitutions, plays an important role in
understanding the dynamics and mechanisms of species evolution. Here, we sequenced …

A single, shared triploidy in three species of parasitic nematodes

A Schoonmaker, Y Hao, DMK Bird… - G3: Genes, Genomes …, 2020 - academic.oup.com
The root-knot nematodes of the genus Meloidogyne are important and damaging parasites
capable of infecting most flowering plants. Within this genus, several species of the …

Deep whole-genome resequencing sheds light on the distribution and effect of amphioxus SNPs

Y Zhu, N Lu, JY Chen, C He, Z Huang, Z Lu - BMC Genomic Data, 2022 - Springer
Background Amphioxus is a model organism for vertebrate evolutionary research. The
significant contrast between morphological phenotypic similarity and high-level genetic …