EGFR mutation incidence in non-small-cell lung cancer of adenocarcinoma histology: a systematic review and global map by ethnicity (mutMapII)

A Midha, S Dearden… - American journal of …, 2015 - pmc.ncbi.nlm.nih.gov
Mutations in the epidermal growth factor receptor (EGFR) gene are commonly observed in
non-small-cell lung cancer (NSCLC), particularly in tumors of adenocarcinoma (ADC) …

HMGA2 as a critical regulator in cancer development

B Mansoori, A Mohammadi, HJ Ditzel, PHG Duijf… - Genes, 2021 - mdpi.com
The high mobility group protein 2 (HMGA2) regulates gene expression by binding to AT-rich
regions of DNA. Akin to other DNA architectural proteins, HMGA2 is highly expressed in …

CellCharter reveals spatial cell niches associated with tissue remodeling and cell plasticity

M Varrone, D Tavernari, A Santamaria-Martínez… - Nature …, 2024 - nature.com
Tissues are organized in cellular niches, the composition and interactions of which can be
investigated using spatial omics technologies. However, systematic analyses of tissue …

Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

AF Aissa, AB Islam, MM Ariss, CC Go, AE Rader… - Nature …, 2021 - nature.com
Tyrosine kinase inhibitors were found to be clinically effective for treatment of patients with
certain subsets of cancers carrying somatic mutations in receptor tyrosine kinases. However …

[HTML][HTML] Cancer-derived succinate promotes macrophage polarization and cancer metastasis via succinate receptor

JY Wu, TW Huang, YT Hsieh, YF Wang, CC Yen… - Molecular cell, 2020 - cell.com
Macrophages form a major cell population in the tumor microenvironment. They can be
activated and polarized into tumor-associated macrophages (TAM) by the tumor-derived …

Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer

CJ Hanley, S Waise, MJ Ellis, MA Lopez… - Nature …, 2023 - nature.com
Fibroblasts are poorly characterised cells that variably impact tumour progression. Here, we
use single cell RNA-sequencing, multiplexed immunohistochemistry and digital cytometry …

NFS1 undergoes positive selection in lung tumours and protects cells from ferroptosis

SW Alvarez, VO Sviderskiy, EM Terzi… - Nature, 2017 - nature.com
Environmental nutrient levels impact cancer cell metabolism, resulting in context-dependent
gene essentiality,. Here, using loss-of-function screening based on RNA interference, we …

Cross-talk between cuproptosis and ferroptosis regulators defines the tumor microenvironment for the prediction of prognosis and therapies in lung adenocarcinoma

Y Shen, D Li, Q Liang, M Yang, Y Pan, H Li - Frontiers in immunology, 2023 - frontiersin.org
Cuproptosis, a newly identified form of programmed cell death, plays vital roles in
tumorigenesis. However, the interconnectivity of cuproptosis and ferroptosis is poorly …

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

MJ Aryee, AE Jaffe, H Corrada-Bravo… - …, 2014 - academic.oup.com
Abstract Motivation: The recently released Infinium HumanMethylation450 array (the
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …

Identification of tumor immune infiltration-associated lncRNAs for improving prognosis and immunotherapy response of patients with non-small cell lung cancer

J Sun, Z Zhang, S Bao, C Yan, P Hou… - Journal for …, 2020 - pmc.ncbi.nlm.nih.gov
Background Increasing evidence has demonstrated the functional relevance of long non-
coding RNAs (lncRNAs) to immunity regulation and the tumor microenvironment in non …