[HTML][HTML] Protein–ligand docking in the machine-learning era

C Yang, EA Chen, Y Zhang - Molecules, 2022 - mdpi.com
Molecular docking plays a significant role in early-stage drug discovery, from structure-
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …

An overview of drug discovery and development

N Berdigaliyev, M Aljofan - Future medicinal chemistry, 2020 - Taylor & Francis
A new medicine will take an average of 10–15 years and more than US $2 billion before it
can reach the pharmacy shelf. Traditionally, drug discovery relied on natural products as the …

Molecular docking: challenges, advances and its use in drug discovery perspective

S Saikia, M Bordoloi - Current drug targets, 2019 - benthamdirect.com
Molecular docking is a process through which small molecules are docked into the
macromolecular structures for scoring its complementary values at the binding sites. It is a …

Molegro virtual docker for docking

G Bitencourt-Ferreira, WF de Azevedo - Docking screens for drug …, 2019 - Springer
Abstract Molegro Virtual Docker is a protein-ligand docking simulation program that allows
us to carry out docking simulations in a fully integrated computational package. MVD has …

Structural modification aimed for improving solubility of lead compounds in early phase drug discovery

B Das, ATK Baidya, AT Mathew, AK Yadav… - Bioorganic & Medicinal …, 2022 - Elsevier
Many lead compounds fail to reach clinical trials despite being potent because of low
bioavailability attributed to their insufficient solubility making solubility a primary and crucial …

Transformer-based molecular generative model for antiviral drug design

J Mao, J Wang, A Zeb, KH Cho, H **… - Journal of chemical …, 2023 - ACS Publications
Since the Simplified Molecular Input Line Entry System (SMILES) is oriented to the atomic-
level representation of molecules and is not friendly in terms of human readability and …

Natural compounds as lactate dehydrogenase inhibitors: Potential therapeutics for lactate dehydrogenase inhibitors-related diseases

JH Han, EJ Lee, W Park, KT Ha… - Frontiers in …, 2023 - frontiersin.org
Lactate dehydrogenase (LDH) is a crucial enzyme involved in energy metabolism and
present in various cells throughout the body. Its diverse physiological functions encompass …

Docking with autodock4

G Bitencourt-Ferreira, VO Pintro… - Docking screens for drug …, 2019 - Springer
AutoDock is one of the most popular receptor-ligand docking simulation programs. It was
first released in the early 1990s and is in continuous development and adapted to specific …

Explainable artificial intelligence-assisted virtual screening and bioinformatics approaches for effective bioactivity prediction of phenolic cyclooxygenase-2 (COX-2) …

M Rudrapal, KK Kirboga, M Abdalla, S Maji - Molecular Diversity, 2024 - Springer
Abstract Cyclooxygenase-2 (COX-2) inhibitors are nonsteroidal anti-inflammatory drugs that
treat inflammation, pain and fever. This study determined the interaction mechanisms of …

[HTML][HTML] Drug databases and their contributions to drug repurposing

Y Masoudi-Sobhanzadeh, Y Omidi, M Amanlou… - Genomics, 2020 - Elsevier
Drug repurposing is an interesting field in the drug discovery scope because of reducing
time and cost. It is also considered as an appropriate method for finding medications for …