Regulatory networks underlying plant responses and adaptation to cold stress

Y Ding, Y Shi, S Yang - Annual Review of Genetics, 2024 - annualreviews.org
Cold is a key determinant for plant growth and flowering time as well as an important
environmental factor limiting plant growth and development. Recent studies have revealed …

Return of the Lemnaceae: Duckweed as a model plant system in the genomics and postgenomics era

K Acosta, KJ Appenroth, L Borisjuk, M Edelman… - The Plant …, 2021 - academic.oup.com
The aquatic Lemnaceae family, commonly called duckweed, comprises some of the smallest
and fastest growing angiosperms known on Earth. Their tiny size, rapid growth by clonal …

BlobToolKit–interactive quality assessment of genome assemblies

R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …

[HTML][HTML] Genome-based taxonomic classification of the phylum Actinobacteria

I Nouioui, L Carro, M García-López… - Frontiers in …, 2018 - frontiersin.org
The application of phylogenetic taxonomic procedures led to improvements in the
classification of bacteria assigned to the phylum Actinobacteria but even so there remains a …

Pladias database of the Czech flora and vegetation

M Chytrý, J Danihelka, Z Kaplan, J Wild, D Holubová… - Preslia, 2021 - air.unimi.it
Abstract The Pladias (Plant Diversity Analysis and Synthesis) Database of the Czech Flora
and Vegetation was developed by the Pladias project team in 2014–2018 and has been …

Reconstructing the genome of the most recent common ancestor of flowering plants

F Murat, A Armero, C Pont, C Klopp, J Salse - Nature genetics, 2017 - nature.com
We describe here the reconstruction of the genome of the most recent common ancestor
(MRCA) of modern monocots and eudicots, accounting for 95% of extant angiosperms, with …

What's in a genome? The C-value enigma and the evolution of eukaryotic genome content

TA Elliott, TR Gregory - … of the Royal Society B: Biological …, 2015 - royalsocietypublishing.org
Some notable exceptions aside, eukaryotic genomes are distinguished from those of
Bacteria and Archaea in a number of ways, including chromosome structure and number …

Comparative genome analysis reveals phylogenetic identity of Bacillus velezensis HNA3 and genomic insights into its plant growth promotion and biocontrol effects

DS Zaid, S Cai, C Hu, Z Li, Y Li - Microbiology Spectrum, 2022 - journals.asm.org
Bacillus velezensis HNA3, a potential plant growth promoter and biocontrol rhizobacterium,
was isolated from plant rhizosphere soils in our previous work. Here, we sequenced the …

A positive correlation between GC content and growth temperature in prokaryotes

EZ Hu, XR Lan, ZL Liu, J Gao, DK Niu - BMC genomics, 2022 - Springer
Background GC pairs are generally more stable than AT pairs; GC-rich genomes were
proposed to be more adapted to high temperatures than AT-rich genomes. Previous studies …

Application‐based guidelines for best practices in plant flow cytometry

E Sliwinska, J Loureiro, IJ Leitch, P Šmarda… - Cytometry Part …, 2022 - Wiley Online Library
Flow cytometry (FCM) is currently the most widely‐used method to establish nuclear DNA
content in plants. Since simple, 1‐3‐parameter, flow cytometers, which are sufficient for most …