A review of cell-based computational modeling in cancer biology
Cancer biology involves complex, dynamic interactions between cancer cells and their
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …
Physical models of collective cell motility: from cell to tissue
In this article, we review physics-based models of collective cell motility. We discuss a range
of techniques at different scales, ranging from models that represent cells as simple self …
of techniques at different scales, ranging from models that represent cells as simple self …
[BOOK][B] Mathematical modeling of biological pattern formation
A Deutsch, S Dormann - 2005 - Springer
In this chapter we have presented mathematical modeling approaches to biological pattern
formation. While reaction-diffusion models are appropriate to describe the spatio-temporal …
formation. While reaction-diffusion models are appropriate to describe the spatio-temporal …
Material approaches to active tissue mechanics
Communities of epithelial cells communicate through intercellular interactions, allowing
them to coordinate their motility, which plays a key role in homeostasis, morphogenesis and …
them to coordinate their motility, which plays a key role in homeostasis, morphogenesis and …
Calibrating agent-based models to tumor images using representation learning
CG Cess, SD Finley - PLoS Computational Biology, 2023 - journals.plos.org
Agent-based models (ABMs) have enabled great advances in the study of tumor
development and therapeutic response, allowing researchers to explore the spatiotemporal …
development and therapeutic response, allowing researchers to explore the spatiotemporal …
Viscoelasticity acts as a marker for tumor extracellular matrix characteristics
CT Mierke - Frontiers in Cell and Developmental Biology, 2021 - frontiersin.org
Biological materials such as extracellular matrix scaffolds, cancer cells, and tissues are often
assumed to respond elastically for simplicity; the viscoelastic response is quite commonly …
assumed to respond elastically for simplicity; the viscoelastic response is quite commonly …
Computational approaches to modelling and optimizing cancer treatment
Computational models can be applied to optimize treatment schedules and model treatment
responses in cancer therapy. In this Review, we provide an overview of such computational …
responses in cancer therapy. In this Review, we provide an overview of such computational …
Vangl2 promotes the formation of long cytonemes to enable distant Wnt/β-catenin signaling
Wnt signaling regulates cell proliferation and cell differentiation as well as migration and
polarity during development. However, it is still unclear how the Wnt ligand distribution is …
polarity during development. However, it is still unclear how the Wnt ligand distribution is …
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling
Motivation Due to the complexity and heterogeneity of multicellular biological systems,
mathematical models that take into account cell signalling, cell population behaviour and the …
mathematical models that take into account cell signalling, cell population behaviour and the …
Extracellular matrix density regulates the formation of tumour spheroids through cell migration
In this work, we show how the mechanical properties of the cellular microenvironment
modulate the growth of tumour spheroids. Based on the composition of the extracellular …
modulate the growth of tumour spheroids. Based on the composition of the extracellular …