The role of 3D genome organization in development and cell differentiation

H Zheng, W **e - Nature reviews Molecular cell biology, 2019 - nature.com
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …

Contribution of semen to early embryo development: fertilization and beyond

M Vallet-Buisan, R Mecca, C Jones… - Human …, 2023 - academic.oup.com
BACKGROUND It has long been thought that the factors affecting embryo and foetal
development were exclusively maternally derived; hence, if issues regarding fertility and …

The chromosome folding problem and how cells solve it

J Dekker, LA Mirny - Cell, 2024 - cell.com
Every cell must solve the problem of how to fold its genome. We describe how the folded
state of chromosomes is the result of the combined activity of multiple conserved …

[HTML][HTML] Embryonic genome instability upon DNA replication timing program emergence

S Takahashi, H Kyogoku, T Hayakawa, H Miura, A Oji… - Nature, 2024 - nature.com
Faithful DNA replication is essential for genome integrity,,–. Under-replicated DNA leads to
defects in chromosome segregation, which are common during embryogenesis,,–. However …

Three-dimensional genomic structure and cohesin occupancy correlate with transcriptional activity during spermatogenesis

C Vara, A Paytuví-Gallart, Y Cuartero, F Le Dily… - Cell reports, 2019 - cell.com
Mammalian gametogenesis involves dramatic and tightly regulated chromatin remodeling,
whose regulatory pathways remain largely unexplored. Here, we generate a comprehensive …

Stage-resolved Hi-C analyses reveal meiotic chromosome organizational features influencing homolog alignment

W Zuo, G Chen, Z Gao, S Li, Y Chen, C Huang… - Nature …, 2021 - nature.com
During meiosis, chromosomes exhibit dramatic changes in morphology and intranuclear
positioning. How these changes influence homolog pairing, alignment, and recombination …

Evolutionary dynamics and molecular mechanisms of HORMA domain protein signaling

Y Gu, A Desai, KD Corbett - Annual review of biochemistry, 2022 - annualreviews.org
Controlled assembly and disassembly of multi-protein complexes is central to cellular
signaling. Proteins of the widespread and functionally diverse HORMA family nucleate …

The nuclear matrix protein SAFB cooperates with major satellite RNAs to stabilize heterochromatin architecture partially through phase separation

X Huo, L Ji, Y Zhang, P Lv, X Cao, Q Wang, Z Yan… - Molecular cell, 2020 - cell.com
Interphase chromatin is hierarchically organized into higher-order architectures that are
essential for gene functions, yet the biomolecules that regulate these 3D architectures …

DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity

Q Du, GC Smith, PL Luu, JM Ferguson, NJ Armstrong… - Cell Reports, 2021 - cell.com
DNA replication timing and three-dimensional (3D) genome organization are associated
with distinct epigenome patterns across large domains. However, whether alterations in the …

The impact of chromosomal fusions on 3D genome folding and recombination in the germ line

C Vara, A Paytuví-Gallart, Y Cuartero… - Nature …, 2021 - nature.com
The spatial folding of chromosomes inside the nucleus has regulatory effects on gene
expression, yet the impact of genome reshuffling on this organization remains unclear. Here …