[BOG][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

RNA modifications and RNA metabolism in neurological disease pathogenesis

B Chatterjee, CKJ Shen, P Majumder - International journal of molecular …, 2021 - mdpi.com
The intrinsic cellular heterogeneity and molecular complexity of the mammalian nervous
system relies substantially on the dynamic nature and spatiotemporal patterning of gene …

Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal

C Lo Giudice, MA Tangaro, G Pesole, E Picardi - Nature protocols, 2020 - nature.com
RNA editing is a widespread post-transcriptional mechanism able to modify transcripts
through insertions/deletions or base substitutions. It is prominent in mammals, in which …

The Q/R editing site of AMPA receptor GluA2 subunit acts as an epigenetic switch regulating dendritic spines, neurodegeneration and cognitive deficits in Alzheimer's …

AL Wright, LM Konen, BG Mockett, GP Morris… - Molecular …, 2023 - Springer
Background RNA editing at the Q/R site of GluA2 occurs with~ 99% efficiency in the healthy
brain, so that the majority of AMPARs contain GluA2 (R) instead of the exonically encoded …

Temperature-dependent RNA editing in octopus extensively recodes the neural proteome

MA Birk, N Liscovitch-Brauer, MJ Dominguez… - Cell, 2023 - cell.com
In poikilotherms, temperature changes challenge the integration of physiological function.
Within the complex nervous systems of the behaviorally sophisticated coleoid cephalopods …

The first A-to-I RNA editome of hemipteran species Coridius chinensis reveals overrepresented recoding and prevalent intron editing in early-diverging insects

Y Duan, L Ma, J Liu, X Liu, F Song, L Tian… - Cellular and Molecular …, 2024 - Springer
Background Metazoan adenosine-to-inosine (A-to-I) RNA editing resembles A-to-G mutation
and increases proteomic diversity in a temporal-spatial manner, allowing organisms …

Adar RNA editing-dependent and -independent effects are required for brain and innate immune functions in Drosophila

P Deng, A Khan, D Jacobson, N Sambrani… - Nature …, 2020 - nature.com
ADAR RNA editing enzymes are high-affinity dsRNA-binding proteins that deaminate
adenosines to inosines in pre-mRNA hairpins and also exert editing-independent effects …

A full repertoire of Hemiptera genomes reveals a multi-step evolutionary trajectory of auto-RNA editing site in insect Adar gene

L Ma, C Zheng, S Xu, Y Xu, F Song, L Tian, W Cai… - RNA biology, 2023 - Taylor & Francis
ABSTRACT Adenosine-to-inosine (A-to-I) RNA editing, mediated by metazoan ADAR
enzymes, is a prevalent post-transcriptional modification that diversifies the proteome and …

The spatial landscape of gene expression isoforms in tissue sections

K Lebrigand, J Bergenstråhle, K Thrane… - Nucleic Acids …, 2023 - academic.oup.com
In situ capturing technologies add tissue context to gene expression data, with the potential
of providing a greater understanding of complex biological systems. However, splicing …

Autorecoding A-to-I RNA editing sites in the Adar gene underwent compensatory gains and losses in major insect clades

Y Duan, L Ma, F Song, L Tian, W Cai, H Li - RNA, 2023 - rnajournal.cshlp.org
As one of the most prevalent RNA modifications in animals, adenosine-to-inosine (A-to-I)
RNA editing facilitates the environmental adaptation of organisms by diversifying the …