Protein sequencing via nanopore based devices: a nanofluidics perspective

M Chinappi, F Cecconi - Journal of Physics: Condensed Matter, 2018 - iopscience.iop.org
Proteins perform a huge number of central functions in living organisms, thus all the new
techniques allowing their precise, fast and accurate characterization at single-molecule level …

Unidirectional single-file transport of full-length proteins through a nanopore

L Yu, X Kang, F Li, B Mehrafrooz, A Makhamreh… - Nature …, 2023 - nature.com
The electrical current blockade of a peptide or protein threading through a nanopore can be
used as a fingerprint of the molecule in biosensor applications. However, threading of full …

Protein transport through a narrow solid-state nanopore at high voltage: experiments and theory

B Cressiot, A Oukhaled, G Patriarche… - ACS …, 2012 - ACS Publications
We report experimentally the transport of an unfolded protein through a narrow solid-state
nanopore of 3 nm diameter as a function of applied voltage. The random coil polypeptide …

Theory of capture rate in polymer translocation

M Muthukumar - The Journal of chemical physics, 2010 - pubs.aip.org
The translocation of macromolecules through a nanopore requires the im**ement of the
molecules at the pore followed by threading through the pore. While most of the discussion …

Wild type, mutant protein unfolding and phase transition detected by single-nanopore recording

C Merstorf, B Cressiot, M Pastoriza-Gallego… - ACS chemical …, 2012 - ACS Publications
Understanding protein folding remains a challenge. A difficulty is to investigate
experimentally all the conformations in the energy landscape. Only single molecule …

Insights into protein sequencing with an α-Hemolysin nanopore by atomistic simulations

G Di Muccio, AE Rossini, D Di Marino, G Zollo… - Scientific reports, 2019 - nature.com
Single molecule protein sequencing would represent a disruptive burst in proteomic
research with important biomedical impacts. Due to their success in DNA sequencing …

Placement of oppositely charged aminoacids at a polypeptide termini determines the voltage-controlled braking of polymer transport through nanometer-scale pores

A Asandei, M Chinappi, J Lee, C Ho Seo, L Mereuta… - Scientific reports, 2015 - nature.com
Protein and solid-state nanometer-scale pores are being developed for the detection,
analysis and manipulation of single molecules. In the simplest embodiment, the entry of a …

On the distribution of DNA translocation times in solid-state nanopores: an analysis using Schrödinger's first-passage-time theory

DY Ling, XS Ling - Journal of Physics: Condensed Matter, 2013 - iopscience.iop.org
In this short paper, a correction is made to the recently proposed solution of Li and Talaga to
a 1D biased diffusion model for linear DNA translocation, and a new analysis will be given to …

Nanopore sensors for single molecular protein detection: Research progress based on computer simulations

G Hu, H Yan, G **, Z Gao, Z Wu, Z Lu… - IET …, 2023 - Wiley Online Library
As biological macromolecules, proteins are involved in important cellular functions ranging
from DNA replication and biosynthesis to metabolic signalling and environmental sensing …

Periodic forces trigger knot untying during translocation of knotted proteins

P Szymczak - Scientific reports, 2016 - nature.com
Proteins need to be unfolded when translocated through the pores in mitochondrial and
other cellular membranes. Knotted proteins, however, might get stuck during this process …