Electron microscopy studies of soft nanomaterials

Z Lyu, L Yao, W Chen, FC Kalutantirige… - Chemical …, 2023 - ACS Publications
This review highlights recent efforts on applying electron microscopy (EM) to soft (including
biological) nanomaterials. We will show how developments of both the hardware and …

A guide to single-particle tracking

F Simon, LE Weiss, S van Teeffelen - Nature Reviews Methods Primers, 2024 - nature.com
Individual proteins and protein complexes undergo various motion types, including free
diffusion, confinement, subdiffusion and directed motion. Different motion behaviours reflect …

Objective comparison of methods to decode anomalous diffusion

G Muñoz-Gil, G Volpe, MA Garcia-March… - Nature …, 2021 - nature.com
Deviations from Brownian motion leading to anomalous diffusion are found in transport
dynamics from quantum physics to life sciences. The characterization of anomalous diffusion …

Roadmap for optical tweezers

G Volpe, OM Maragò… - Journal of Physics …, 2023 - iopscience.iop.org
Optical tweezers are tools made of light that enable contactless pushing, trap**, and
manipulation of objects, ranging from atoms to space light sails. Since the pioneering work …

Bayesian deep learning for error estimation in the analysis of anomalous diffusion

H Seckler, R Metzler - Nature Communications, 2022 - nature.com
Modern single-particle-tracking techniques produce extensive time-series of diffusive motion
in a wide variety of systems, from single-molecule motion in living-cells to movement …

Machine-learning solutions for the analysis of single-particle diffusion trajectories

H Seckler, J Szwabinski, R Metzler - The Journal of Physical …, 2023 - ACS Publications
Single-particle traces of the diffusive motion of molecules, cells, or animals are by now
routinely measured, similar to stochastic records of stock prices or weather data …

Heterogeneous anomalous transport in cellular and molecular biology

TA Waigh, N Korabel - Reports on Progress in Physics, 2023 - iopscience.iop.org
It is well established that a wide variety of phenomena in cellular and molecular biology
involve anomalous transport eg the statistics for the motility of cells and molecules are …

Anomalous diffusion, aging, and nonergodicity of scaled Brownian motion with fractional Gaussian noise: Overview of related experimental observations and models

W Wang, R Metzler, AG Cherstvy - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
How does a systematic time-dependence of the diffusion coefficient D (t) affect the ergodic
and statistical characteristics of fractional Brownian motion (FBM)? Here, we answer this …

Anomalous diffusion, nonergodicity, non-Gaussianity, and aging of fractional Brownian motion with nonlinear clocks

Y Liang, W Wang, R Metzler, AG Cherstvy - Physical Review E, 2023 - APS
How do nonlinear clocks in time and/or space affect the fundamental properties of a
stochastic process? Specifically, how precisely may ergodic processes such as fractional …

Deep learning-based parameter estimation of stochastic differential equations driven by fractional Brownian motions with measurement noise

J Feng, X Wang, Q Liu, Y Li, Y Xu - Communications in Nonlinear Science …, 2023 - Elsevier
This study proposes a general parameter estimation neural network (PENN) to jointly
identify the system parameters and the noise parameters of a stochastic differential equation …