Tracing the evolution of gene loss in obligate bacterial symbionts

NA Moran - Current opinion in microbiology, 2003 - Elsevier
The γ-proteobacterial symbionts of insects are a model group for comparative studies of
genome reduction. The phylogenetic proximity of these reduced genomes to the larger …

Mobile DNA in obligate intracellular bacteria

SR Bordenstein, WS Reznikoff - Nature Reviews Microbiology, 2005 - nature.com
The small genomes of obligate intracellular bacteria are often presumed to be impervious to
mobile DNA and the fluid genetic processes that drive diversification in free-living bacteria …

The Tripartite Associations between Bacteriophage, Wolbachia, and Arthropods

SR Bordenstein, ML Marshall, AJ Fry, U Kim… - PLoS …, 2006 - journals.plos.org
By manipulating arthropod reproduction worldwide, the heritable endosymbiont Wolbachia
has spread to pandemic levels. Little is known about the microbial basis of cytoplasmic …

Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

Y Liu, PM Harrison, V Kunin, M Gerstein - Genome biology, 2004 - Springer
Background Pseudogenes often manifest themselves as disabled copies of known genes. In
prokaryotes, it was generally believed (with a few well-known exceptions) that they were …

Phylogenomics and signature proteins for the alpha proteobacteria and its main groups

RS Gupta, A Mok - BMC microbiology, 2007 - Springer
Background Alpha proteobacteria are one of the largest and most extensively studied
groups within bacteria. However, for these bacteria as a whole and for all of its major …

The Olive Fly Endosymbiont, “Candidatus Erwinia dacicola,” Switches from an Intracellular Existence to an Extracellular Existence during Host Insect Development

AM Estes, DJ Hearn, JL Bronstein… - Applied and …, 2009 - Am Soc Microbiol
As polyphagous, holometabolous insects, tephritid fruit flies (Diptera: Tephritidae) provide a
unique habitat for endosymbiotic bacteria, especially those microbes associated with the …

Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes

PS Novichkov, YI Wolf, I Dubchak… - Journal of …, 2009 - Am Soc Microbiol
In order to explore microevolutionary trends in bacteria and archaea, we constructed a data
set of 41 alignable tight genome clusters (ATGCs). We show that the ratio of the medians of …

Correlations between bacterial ecology and mobile DNA

ILG Newton, SR Bordenstein - Current microbiology, 2011 - Springer
Several factors can affect the density of mobile DNA in bacterial genomes including rates of
exposure to novel gene pools, recombination, and reductive evolution. These traits are …

Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture

BN Kent, L Salichos, JG Gibbons… - Genome biology and …, 2011 - academic.oup.com
Bacteriophage flux can cause the majority of genetic diversity in free-living bacteria. This
tenet of bacterial genome evolution generally does not extend to obligate intracellular …

Genomic analysis of an ascomycete fungus from the rice planthopper reveals how it adapts to an endosymbiotic lifestyle

HW Fan, H Noda, HQ **e, Y Suetsugu… - Genome Biology and …, 2015 - academic.oup.com
A number of sap-sucking insects harbor endosymbionts, which are thought to play an
important role in the development of their hosts. One of the most important rice pests, the …