[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice

T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

Heterosis in crop improvement

J Paril, J Reif, A Fournier‐Level… - The Plant …, 2024 - Wiley Online Library
Heterosis, also known as hybrid vigor, is the phenomenon wherein a progeny exhibits
superior traits relative to one or both parents. In terms of crop breeding, this usually refers to …

[HTML][HTML] Living organisms author their read-write genomes in evolution

JA Shapiro - Biology, 2017 - mdpi.com
Evolutionary variations generating phenotypic adaptations and novel taxa resulted from
complex cellular activities altering genome content and expression:(i) Symbiogenetic cell …

General gene movement off the X chromosome in the Drosophila genus

MD Vibranovski, Y Zhang, M Long - Genome research, 2009 - genome.cshlp.org
In Drosophila melanogaster, there is an excess of genes duplicated by retroposition from the
X chromosome to the autosomes. Most of those retrogenes that originated on the X …

Systematic analyses reveal uniqueness and origin of the CFEM domain in fungi

ZN Zhang, QY Wu, GZ Zhang, YY Zhu, RW Murphy… - Scientific Reports, 2015 - nature.com
CFEM domain commonly occurs in fungal extracellular membrane proteins. To provide
insights for understanding putative functions of CFEM, we investigate the evolutionary …

Quantifying the mechanisms of domain gain in animal proteins

M Buljan, A Frankish, A Bateman - Genome biology, 2010 - Springer
Background Protein domains are protein regions that are shared among different proteins
and are frequently functionally and structurally independent from the rest of the protein …

Emergence of a novel chimeric gene underlying grain number in rice

H Chen, Y Tang, J Liu, L Tan, J Jiang, M Wang, Z Zhu… - Genetics, 2017 - academic.oup.com
Grain number is an important factor in determining grain production of rice (Oryza sativa L.).
The molecular genetic basis for grain number is complex. Discovering new genes involved …

Recurrent Tandem Gene Duplication Gave Rise to Functionally Divergent Genes in Drosophila

C Fan, Y Chen, M Long - Molecular biology and evolution, 2008 - academic.oup.com
Tandem gene duplication is one of the major gene duplication mechanisms in eukaryotes,
as illustrated by the prevalence of gene family clusters. Tandem duplicated paralogs usually …

Evolution of trichocyte keratins

L Eckhart, F Ehrlich - The Hair Fibre: Proteins, Structure and Development, 2018 - Springer
The evolution of keratins was closely linked to the evolution of epithelia and epithelial
appendages such as hair. The characterization of keratins in model species and recent …

[HTML][HTML] The role of transposable elements in functional evolution of amphioxus genome: the case of opsin gene family

CN Pantzartzi, J Pergner, Z Kozmik - Scientific Reports, 2018 - nature.com
Transposable elements (TEs) are able to jump to new locations (transposition) in the
genome, usually after replication. They constitute the so-called selfish or junk DNA and take …