The quantum chemical cluster approach for modeling enzyme reactions
PEM Siegbahn, F Himo - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
This Overview describes the general concepts behind the quantum chemical cluster
approach for modeling enzyme active sites and reaction mechanisms. First, the underlying …
approach for modeling enzyme active sites and reaction mechanisms. First, the underlying …
Computer-aided understanding and engineering of enzymatic selectivity
L Wu, L Qin, Y Nie, Y Xu, YL Zhao - Biotechnology Advances, 2022 - Elsevier
Abstract Enzymes offering chemo-, regio-, and stereoselectivity enable the asymmetric
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
Modeling enzymatic enantioselectivity using quantum chemical methodology
The computational study of enantioselective reactions is a challenging task that requires
high accuracy, as very small energy differences have to be reproduced. Quantum chemical …
high accuracy, as very small energy differences have to be reproduced. Quantum chemical …
Structure–function relationships of epoxide hydrolases and their potential use in biocatalysis
M Widersten, A Gurell, D Lindberg - Biochimica et Biophysica Acta (BBA) …, 2010 - Elsevier
BACKGROUND: Chiral epoxides and diols are important synthons for manufacturing fine
chemicals and pharmaceuticals. The epoxide hydrolases (EC 3.3. 2.-) catalyze the hydrolytic …
chemicals and pharmaceuticals. The epoxide hydrolases (EC 3.3. 2.-) catalyze the hydrolytic …
Full reaction mechanism of nitrile hydratase: a cyclic intermediate and an unexpected disulfide switch
KH Hopmann - Inorganic Chemistry, 2014 - ACS Publications
The full reaction mechanism of nitrile hydratase has remained elusive, despite extensive
theoretical and experimental studies. A novel reaction mechanism for nitrile hydratase is …
theoretical and experimental studies. A novel reaction mechanism for nitrile hydratase is …
Computational Mechanistic Analysis of the Formation of the Magnesium Silicate Monomers MgSiO3 and Mg2SiO4
AR Flint, RC Fortenberry - The Journal of Physical Chemistry A, 2024 - ACS Publications
Silicate grains comprise a large fraction of cosmic dust, motivating a need to understand
how they form. The current body of work on silicates generally reflects the abundance of …
how they form. The current body of work on silicates generally reflects the abundance of …
[HTML][HTML] Computational insights into the known inhibitors of human soluble epoxide hydrolase
Human soluble epoxide hydrolase (hsEH) is involved in the hydrolysis of
epoxyeicosatrienoic acids (EETs), which have potent anti-inflammatory properties. Given …
epoxyeicosatrienoic acids (EETs), which have potent anti-inflammatory properties. Given …
[HTML][HTML] Applications of water molecules for analysis of macromolecule properties
Water molecules maintain proteins' structures, functions, stabilities and dynamics. They can
occupy certain positions or pass quickly via a protein's interior. Regardless of their …
occupy certain positions or pass quickly via a protein's interior. Regardless of their …
Quantum chemical modeling of enzymatic reactions: The case of histone lysine methyltransferase
Quantum chemical cluster models of enzyme active sites are today an important and
powerful tool in the study of various aspects of enzymatic reactivity. This methodology has …
powerful tool in the study of various aspects of enzymatic reactivity. This methodology has …
Expanding the catalytic triad in epoxide hydrolases and related enzymes
Potato epoxide hydrolase 1 exhibits rich enantio-and regioselectivity in the hydrolysis of a
broad range of substrates. The enzyme can be engineered to increase the yield of optically …
broad range of substrates. The enzyme can be engineered to increase the yield of optically …