The quantum chemical cluster approach for modeling enzyme reactions

PEM Siegbahn, F Himo - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
This Overview describes the general concepts behind the quantum chemical cluster
approach for modeling enzyme active sites and reaction mechanisms. First, the underlying …

Computer-aided understanding and engineering of enzymatic selectivity

L Wu, L Qin, Y Nie, Y Xu, YL Zhao - Biotechnology Advances, 2022 - Elsevier
Abstract Enzymes offering chemo-, regio-, and stereoselectivity enable the asymmetric
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …

Modeling enzymatic enantioselectivity using quantum chemical methodology

X Sheng, M Kazemi, F Planas, F Himo - ACS Catalysis, 2020 - ACS Publications
The computational study of enantioselective reactions is a challenging task that requires
high accuracy, as very small energy differences have to be reproduced. Quantum chemical …

Structure–function relationships of epoxide hydrolases and their potential use in biocatalysis

M Widersten, A Gurell, D Lindberg - Biochimica et Biophysica Acta (BBA) …, 2010 - Elsevier
BACKGROUND: Chiral epoxides and diols are important synthons for manufacturing fine
chemicals and pharmaceuticals. The epoxide hydrolases (EC 3.3. 2.-) catalyze the hydrolytic …

Full reaction mechanism of nitrile hydratase: a cyclic intermediate and an unexpected disulfide switch

KH Hopmann - Inorganic Chemistry, 2014 - ACS Publications
The full reaction mechanism of nitrile hydratase has remained elusive, despite extensive
theoretical and experimental studies. A novel reaction mechanism for nitrile hydratase is …

Computational Mechanistic Analysis of the Formation of the Magnesium Silicate Monomers MgSiO3 and Mg2SiO4

AR Flint, RC Fortenberry - The Journal of Physical Chemistry A, 2024 - ACS Publications
Silicate grains comprise a large fraction of cosmic dust, motivating a need to understand
how they form. The current body of work on silicates generally reflects the abundance of …

[HTML][HTML] Computational insights into the known inhibitors of human soluble epoxide hydrolase

M Bzówka, K Mitusińska, K Hopko, A Góra - Drug Discovery Today, 2021 - Elsevier
Human soluble epoxide hydrolase (hsEH) is involved in the hydrolysis of
epoxyeicosatrienoic acids (EETs), which have potent anti-inflammatory properties. Given …

[HTML][HTML] Applications of water molecules for analysis of macromolecule properties

K Mitusińska, A Raczyńska, M Bzówka… - Computational and …, 2020 - Elsevier
Water molecules maintain proteins' structures, functions, stabilities and dynamics. They can
occupy certain positions or pass quickly via a protein's interior. Regardless of their …

Quantum chemical modeling of enzymatic reactions: The case of histone lysine methyltransferase

P Georgieva, F Himo - Journal of Computational Chemistry, 2010 - Wiley Online Library
Quantum chemical cluster models of enzyme active sites are today an important and
powerful tool in the study of various aspects of enzymatic reactivity. This methodology has …

Expanding the catalytic triad in epoxide hydrolases and related enzymes

BA Amrein, P Bauer, F Duarte, Å Janfalk Carlsson… - ACS …, 2015 - ACS Publications
Potato epoxide hydrolase 1 exhibits rich enantio-and regioselectivity in the hydrolysis of a
broad range of substrates. The enzyme can be engineered to increase the yield of optically …