Transcription factors: Bridge between cell signaling and gene regulation
P Weidemüller, M Kholmatov, E Petsalaki… - …, 2021 - Wiley Online Library
Transcription factors (TFs) are key regulators of intrinsic cellular processes, such as
differentiation and development, and of the cellular response to external perturbation …
differentiation and development, and of the cellular response to external perturbation …
Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications
Proteins regulate biological processes by changing their structure or abundance to
accomplish a specific function. In response to a perturbation, protein structure may be …
accomplish a specific function. In response to a perturbation, protein structure may be …
A central chaperone-like role for 14-3-3 proteins in human cells
D Segal, S Maier, GJ Mastromarco, WW Qian… - Molecular cell, 2023 - cell.com
3-3 proteins are highly conserved regulatory proteins that interact with hundreds of
structurally diverse clients and act as central hubs of signaling networks. However, how 14-3 …
structurally diverse clients and act as central hubs of signaling networks. However, how 14-3 …
Integrating knowledge and omics to decipher mechanisms via large‐scale models of signaling networks
Signal transduction governs cellular behavior, and its dysregulation often leads to human
disease. To understand this process, we can use network models based on prior …
disease. To understand this process, we can use network models based on prior …
[HTML][HTML] Proteomes are of proteoforms: embracing the complexity
K Carbonara, M Andonovski, JR Coorssen - Proteomes, 2021 - mdpi.com
Proteomes are complex—much more so than genomes or transcriptomes. Thus, simplifying
their analysis does not simplify the issue. Proteomes are of proteoforms, not canonical …
their analysis does not simplify the issue. Proteomes are of proteoforms, not canonical …
Global, in situ analysis of the structural proteome in individuals with Parkinson's disease to identify a new class of biomarker
MT Mackmull, L Nagel, F Sesterhenn… - Nature structural & …, 2022 - nature.com
Parkinson's disease (PD) is a prevalent neurodegenerative disease for which robust
biomarkers are needed. Because protein structure reflects function, we tested whether …
biomarkers are needed. Because protein structure reflects function, we tested whether …
Drug target identification in tissues by thermal proteome profiling
Drug target deconvolution can accelerate the drug discovery process by identifying a drug's
targets (facilitating medicinal chemistry efforts) and off-targets (anticipating toxicity effects or …
targets (facilitating medicinal chemistry efforts) and off-targets (anticipating toxicity effects or …
DrugMap: A quantitative pan-cancer analysis of cysteine ligandability
M Takahashi, HB Chong, S Zhang, TY Yang… - Cell, 2024 - cell.com
Cysteine-focused chemical proteomic platforms have accelerated the clinical development
of covalent inhibitors for a wide range of targets in cancer. However, how different oncogenic …
of covalent inhibitors for a wide range of targets in cancer. However, how different oncogenic …
Spatially structured exchange of metabolites enhances bacterial survival and resilience in biofilms
Biofilm formation enhances bacterial survival and antibiotic tolerance, but the underlying
mechanisms are incompletely understood. Here, we show that biofilm growth is …
mechanisms are incompletely understood. Here, we show that biofilm growth is …
Impact of cellular crowding on protein structural dynamics investigated by EPR spectroscopy
The study of how the intracellular medium influences protein structural dynamics and protein–
protein interactions is a captivating area of research for scientists aiming to comprehend …
protein interactions is a captivating area of research for scientists aiming to comprehend …