[HTML][HTML] Renewable methanol and formate as microbial feedstocks

CAR Cotton, NJ Claassens, S Benito-Vaquerizo… - Current Opinion in …, 2020 - Elsevier
Highlights•One-carbon compounds can be made from CO 2 to provide renewable microbial
feedstocks.•Methanol and formate have key advantages over gaseous one-carbon …

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)

I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila… - Nature protocols, 2021 - nature.com
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …

A synthetic methylotrophic Escherichia coli as a chassis for bioproduction from methanol

MA Reiter, T Bradley, LA Büchel, P Keller, E Hegedis… - Nature …, 2024 - nature.com
Methanol synthesized from captured greenhouse gases is an emerging renewable
feedstock with great potential for bioproduction. Recent research has raised the prospect of …

[HTML][HTML] Conversion of Escherichia coli to generate all biomass carbon from CO2

S Gleizer, R Ben-Nissan, YM Bar-On, N Antonovsky… - Cell, 2019 - cell.com
The living world is largely divided into autotrophs that convert CO 2 into biomass and
heterotrophs that consume organic compounds. In spite of widespread interest in renewable …

Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle

P Keller, MA Reiter, P Kiefer, T Gassler… - Nature …, 2022 - nature.com
Methanol is a liquid with high energy storage capacity that holds promise as an alternative
substrate to replace sugars in the biotechnology industry. It can be produced from CO2 or …

A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011

JD Orth, TM Conrad, J Na, JA Lerman… - Molecular systems …, 2011 - embopress.org
The initial genome‐scale reconstruction of the metabolic network of Escherichia coli K‐12
MG1655 was assembled in 2000. It has been updated and periodically released since then …

[HTML][HTML] Innovative chemicals and materials from bacterial aromatic catabolic pathways

CW Johnson, D Salvachúa, NA Rorrer, BA Black… - Joule, 2019 - cell.com
To drive innovation in chemical and material applications beyond what has been afforded by
the mature petrochemical industry, new molecules that possess diverse chemical …

Fast reconstruction of compact context-specific metabolic network models

N Vlassis, MP Pacheco, T Sauter - PLoS computational biology, 2014 - journals.plos.org
Systemic approaches to the study of a biological cell or tissue rely increasingly on the use of
context-specific metabolic network models. The reconstruction of such a model from high …

Reinforcement learning for bioretrosynthesis

M Koch, T Duigou, JL Faulon - ACS synthetic biology, 2019 - ACS Publications
Metabolic engineering aims to produce chemicals of interest from living organisms, to
advance toward greener chemistry. Despite efforts, the research and development process …

Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli

AI Flamholz, E Dugan, C Blikstad, S Gleizer… - elife, 2020 - elifesciences.org
Many photosynthetic organisms employ a CO2 concentrating mechanism (CCM) to increase
the rate of CO2 fixation via the Calvin cycle. CCMs catalyze≈ 50% of global photosynthesis …