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[HTML][HTML] Renewable methanol and formate as microbial feedstocks
Highlights•One-carbon compounds can be made from CO 2 to provide renewable microbial
feedstocks.•Methanol and formate have key advantages over gaseous one-carbon …
feedstocks.•Methanol and formate have key advantages over gaseous one-carbon …
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
A synthetic methylotrophic Escherichia coli as a chassis for bioproduction from methanol
Methanol synthesized from captured greenhouse gases is an emerging renewable
feedstock with great potential for bioproduction. Recent research has raised the prospect of …
feedstock with great potential for bioproduction. Recent research has raised the prospect of …
[HTML][HTML] Conversion of Escherichia coli to generate all biomass carbon from CO2
The living world is largely divided into autotrophs that convert CO 2 into biomass and
heterotrophs that consume organic compounds. In spite of widespread interest in renewable …
heterotrophs that consume organic compounds. In spite of widespread interest in renewable …
Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle
Methanol is a liquid with high energy storage capacity that holds promise as an alternative
substrate to replace sugars in the biotechnology industry. It can be produced from CO2 or …
substrate to replace sugars in the biotechnology industry. It can be produced from CO2 or …
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
The initial genome‐scale reconstruction of the metabolic network of Escherichia coli K‐12
MG1655 was assembled in 2000. It has been updated and periodically released since then …
MG1655 was assembled in 2000. It has been updated and periodically released since then …
[HTML][HTML] Innovative chemicals and materials from bacterial aromatic catabolic pathways
To drive innovation in chemical and material applications beyond what has been afforded by
the mature petrochemical industry, new molecules that possess diverse chemical …
the mature petrochemical industry, new molecules that possess diverse chemical …
Fast reconstruction of compact context-specific metabolic network models
Systemic approaches to the study of a biological cell or tissue rely increasingly on the use of
context-specific metabolic network models. The reconstruction of such a model from high …
context-specific metabolic network models. The reconstruction of such a model from high …
Reinforcement learning for bioretrosynthesis
Metabolic engineering aims to produce chemicals of interest from living organisms, to
advance toward greener chemistry. Despite efforts, the research and development process …
advance toward greener chemistry. Despite efforts, the research and development process …
Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli
Many photosynthetic organisms employ a CO2 concentrating mechanism (CCM) to increase
the rate of CO2 fixation via the Calvin cycle. CCMs catalyze≈ 50% of global photosynthesis …
the rate of CO2 fixation via the Calvin cycle. CCMs catalyze≈ 50% of global photosynthesis …