oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor

H Löffler-Wirth, M Kalcher, H Binder - Bioinformatics, 2015 - academic.oup.com
Motivation: Comprehensive analysis of genome-wide molecular data challenges
bioinformatics methodology in terms of intuitive visualization with single-sample resolution …

Integrated multi-omics maps of lower-grade gliomas

H Binder, M Schmidt, L Hopp, S Davitavyan… - Cancers, 2022 - mdpi.com
Simple Summary Data from multiple omics domains were increasingly generated in large-
scale tumour studies to enhance our understanding of molecular mechanisms of cancer. We …

Visual comparative omics of fungi for plant biomass deconstruction

S Miyauchi, D Navarro, IV Grigoriev, A Lipzen… - Frontiers in …, 2016 - frontiersin.org
Wood-decay fungi contain the cellular mechanisms to decompose such plant cell wall
components as cellulose, hemicellulose, and lignin. A multi-omics approach to the …

The transcriptome and methylome of the develo** and aging brain and their relations to gliomas and psychological disorders

H Loeffler-Wirth, L Hopp, M Schmidt, R Zakharyan… - Cells, 2022 - mdpi.com
Mutually linked expression and methylation dynamics in the brain govern genome
regulation over the whole lifetime with an impact on cognition, psychological disorders, and …

Combined SOM-portrayal of gene expression and DNA methylation landscapes disentangles modes of epigenetic regulation in glioblastoma

L Hopp, H Löffler-Wirth, J Galle, H Binder - Epigenomics, 2018 - Taylor & Francis
Aim: We present here a novel method that enables unraveling the interplay between gene
expression and DNA methylation in complex diseases such as cancer. Materials & methods …

Development of tissue-specific age predictors using DNA methylation data

H Choi, S Joe, H Nam - Genes, 2019 - mdpi.com
DNA methylation patterns have been shown to change throughout the normal aging
process. Several studies have found epigenetic aging markers using age predictors, but …

Pattern analysis of genetics and genomics: a survey of the state-of-art

J Chaki, N Dey - Multimedia Tools and Applications, 2020 - Springer
The endless enhancement and decreasing charges of a complete human genome have
given rise to fast acceptance of genetic and genomic information at both research institutions …

Analysis of large-scale OMIC data using self organizing maps

H Binder, H Wirth - … of Information Science and Technology, Third …, 2015 - igi-global.com
The development and decaying costs for highthroughput bio-molecular analytics give rise to
huge and still increasing amounts of data collected in the context of modern 'omics' realms …

Personalized disease phenotypes from massive OMICs data

H Binder, L Hopp, K Lembcke, H Wirth - … , Methodologies, Tools, and …, 2017 - igi-global.com
Application of new high-throughput technologies in molecular medicine collects massive
data for hundreds to thousands of persons in large cohort studies by characterizing the …

On the cooperation between epigenetics and transcription factor networks in the specification of tissue stem cells

T Thalheim, L Hopp, H Binder, G Aust, J Galle - Epigenomes, 2018 - mdpi.com
It is generally accepted that epigenetic modifications, such as DNA and histone
methylations, affect transcription and that a gene's transcription feeds back on its epigenetic …